Ddah041386.1
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459218.1:2667432-2669610[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.55 69 5.6 0.2 6 21 220 235 220 236 0.94 2 13 0.0058 0.73 11.8 0.1 3 23 266 286 264 286 0.93 3 13 0.021 2.7 10.0 4.2 1 23 299 321 299 321 0.97 4 13 1.4e-05 0.0018 20.0 3.5 1 23 332 354 332 354 0.99 5 13 0.00016 0.02 16.7 1.9 1 23 362 385 362 385 0.96 6 13 0.0048 0.61 12.0 0.1 2 23 392 413 391 413 0.96 7 13 0.5 63 5.7 7.2 1 23 419 441 419 441 0.97 8 13 3.7e-07 4.7e-05 25.0 1.2 1 23 447 469 447 469 0.96 9 13 2.9e-05 0.0037 19.0 0.8 1 23 475 497 475 497 0.98 10 13 1.2e-06 0.00015 23.4 0.2 1 23 503 525 503 525 0.98 11 13 2.6e-05 0.0033 19.2 0.4 1 23 531 553 531 553 0.99 12 13 4.8e-05 0.0061 18.3 2.2 1 21 559 579 559 581 0.96 13 13 2.4e-06 0.00031 22.4 0.6 1 23 587 609 587 609 0.98
Sequence Information
- Coding Sequence
- atGGAAATAACTGTTCAGACATTCGACAGAATATGCCGCGTGTGTTTAATAGAATGTGCCGACATGAAGTCTCTATTTACAAAGATGGACAACGAAAAACGCAACTTGTTCGATATCCTTGCATTTACTGCTGATATTAATGTTAAATTCGAGGATAGTCTGCCAAAACAGGTTTGTGGTGAATGTGAGTCGGTCATGTGCAAGGCTGATGCATTTAAACGCCGCTGTCTGGATTCTGAGACGATTCTAAACAACATCTACCAAAACTCCTTGACCGATGGTAAAAGTTCGAGTATTGACAAAAAATGCTCGATAAAAGATGAAAATAGTGGTATGACCGAAAAATTAGGCAATTATATTAGTTTTGAGACTTCAAGTATTACTAATTTCAGTTCCCAAGACAGTTTTGATAAGAAAAATGTGTTTACACAAGATGTTACATTATACCCTATCGCCGACGCTAGTTTTTGTAAGCTTACTGACTCTGTAGTACCTGAAGATCCTGAACAACCTGTCAAAGAAGAGATAAACTTGAATTTTGATGATGATTTAGGCTTTCCTGATCACTACGATGATGAAACACCTTGTGACACATTACCTATAGAACTGAAGGAAGAAGAACCTTTAAAAACTGCAACAAAGAAGTACACATGTTGCTGTAGACTATCATTTGCTACTAAAGACAAGTATAAAAGCCATATAAAGCAAGAAAACtgtaataaatacaaaaaaatacaaaaaatcttagaaaaagtaaaaaaaaacaaattagttaATGTTAAAAATGAGATAGAATGCATTGAATGTAATCAAAAGTTCAAAACTCCAAATGCGTGGAGGATACACCAAGAAACCCATTGTAATGAACATTTATCCGAAAGTAAATCATTATTGCATGTTTGCAAATTCTGCTTATGTCAGTTCAAAACGGAGGCAGCATTGAGAACTCAcattttaaaacatgaaaaaaccGTAACCAGCAAAACAGAATCATACCAATGCTCATTCtgtttacgtaaattcaagaatAAGACTTCCCTAACTGCACACATGCAACGCCACGAAGAAATGGACAATATAAAACACATCTGCAAAGTATGTAAAAGAGAATTTAAATACAAAGCCTATTTAGAAAACCACGTACTAACAATGCATACAAGAAAGAATGGTATAAGTTGTGATGTGTGTGCCCAAAGTTTTCCTAATGAAGACAGTTTAGAATTGCATAAAAGCAGTCATCAGAATGAAAAGAAGCACCATTGTACGGTGTGTACTAAAGGCTTTCTTATGTTGTGTACACTGAAGGAGCATATGCGGACACATACGGGTGAGAAACCGTTCTTATGTTCGCAGTGCGGACGAGGGTTTAGCCAGAAGACTAATTTGGCTCAGCACATGAGAAGACATCAGGGGTTGAAGCCTTTTAAGTGTGAGAATTGTGAAAAAAGATTCGTATCAAAAGGCGAACTCGACGCCCACAACCGCAAACACAGCGGAGCACACCCTTTCGTCTGTGACGACTGTGGCAACGGCTTCACAACATCAAGCGCCCTAGTAAAACACCGTCGAATTCACACCGGAGAGAAACCTTACCAATGTGACCTCTGCCCGATGAGGTTTGCTGCATCAGGGACTTTGAAGAACCATCGGAGAACCCACACCGGTGAACGGCCCTTCCAATGCTCGTACTGTGAAAAAGCTTTCGTCCAACGCAATGATTTGATCTCTCATATTCGTTGCCATACCGGTGAGAAGCCATATATTTGTACCCAGTGCGGTCAGTCGTTTAGAAAAGCTTCAGGGTTGAAGAGCCATGTTAAGATGCATGTGAAGGAGTCAGGTAATTTGCTGCAAGGGGTTAGTGTGATGTTGAATGGAATGGAGTGTGCGGAACAGTGA
- Protein Sequence
- MEITVQTFDRICRVCLIECADMKSLFTKMDNEKRNLFDILAFTADINVKFEDSLPKQVCGECESVMCKADAFKRRCLDSETILNNIYQNSLTDGKSSSIDKKCSIKDENSGMTEKLGNYISFETSSITNFSSQDSFDKKNVFTQDVTLYPIADASFCKLTDSVVPEDPEQPVKEEINLNFDDDLGFPDHYDDETPCDTLPIELKEEEPLKTATKKYTCCCRLSFATKDKYKSHIKQENCNKYKKIQKILEKVKKNKLVNVKNEIECIECNQKFKTPNAWRIHQETHCNEHLSESKSLLHVCKFCLCQFKTEAALRTHILKHEKTVTSKTESYQCSFCLRKFKNKTSLTAHMQRHEEMDNIKHICKVCKREFKYKAYLENHVLTMHTRKNGISCDVCAQSFPNEDSLELHKSSHQNEKKHHCTVCTKGFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKSHVKMHVKESGNLLQGVSVMLNGMECAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041986;
- 90% Identity
- iTF_00301422;
- 80% Identity
- -