Basic Information

Insect: Hoplodrina ambigua
Gene Symbol: -
Assembly: GCA_949774945.1
Location: OX458991.1:6131065-6133382[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.89 66 4.9 2.0 6 21 218 233 208 234 0.88

2 13 0.025 1.9 9.7 0.7 3 23 261 281 259 281 0.92

3 13 0.02 1.5 10.0 3.2 1 23 294 316 294 316 0.97

4 13 3.3e-05 0.0025 18.8 3.4 1 23 327 349 327 349 0.99

5 13 3.7e-05 0.0027 18.6 1.6 1 23 357 380 357 380 0.96

6 13 0.016 1.2 10.3 0.1 2 23 387 408 386 408 0.95

7 13 0.014 1 10.5 4.5 1 23 414 436 414 436 0.98

8 13 3.5e-07 2.6e-05 25.0 1.2 1 23 442 464 442 464 0.96

9 13 3.3e-06 0.00024 22.0 0.4 1 23 470 492 470 492 0.99

10 13 4.7e-07 3.5e-05 24.6 0.3 1 23 498 520 498 520 0.98

11 13 2.5e-05 0.0018 19.2 0.4 1 23 526 548 526 548 0.99

12 13 4.6e-05 0.0034 18.4 2.2 1 21 554 574 554 576 0.96

13 13 1.8e-06 0.00013 22.8 1.8 1 23 582 604 582 604 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.89	66	4.9	2.0	6	21	218	233	208	234	0.88
2	13	0.025	1.9	9.7	0.7	3	23	261	281	259	281	0.92
3	13	0.02	1.5	10.0	3.2	1	23	294	316	294	316	0.97
4	13	3.3e-05	0.0025	18.8	3.4	1	23	327	349	327	349	0.99
5	13	3.7e-05	0.0027	18.6	1.6	1	23	357	380	357	380	0.96
6	13	0.016	1.2	10.3	0.1	2	23	387	408	386	408	0.95
7	13	0.014	1	10.5	4.5	1	23	414	436	414	436	0.98
8	13	3.5e-07	2.6e-05	25.0	1.2	1	23	442	464	442	464	0.96
9	13	3.3e-06	0.00024	22.0	0.4	1	23	470	492	470	492	0.99
10	13	4.7e-07	3.5e-05	24.6	0.3	1	23	498	520	498	520	0.98
11	13	2.5e-05	0.0018	19.2	0.4	1	23	526	548	526	548	0.99
12	13	4.6e-05	0.0034	18.4	2.2	1	21	554	574	554	576	0.96
13	13	1.8e-06	0.00013	22.8	1.8	1	23	582	604	582	604	0.98

Sequence Information

Coding Sequence: ATGGAAATAACTGTTCCAACATTCGACAAAATATGCCGCGTCTGTTTAACACAATGTGCCGACATGAAGTCGTTATTTTCGAAGATAGACGGCGATAAACGAAACTTGTTTGAAATCCTTGCATTTACTGCTGATATTAATGTTAAATTCGAGGATAGTCTGCCTAAACAGGTTTGTGGTGAATGTGAGTCGGTCATGTGCAAGGCAGATGCATTTAAACGCCGTTGCCAGAATTCTGAGACGATTTTAAACAACATCTACCAGCTTTCTGTAAGCCGTGGCGAAACATCGAATATTGACAAAAAATGCTCAATAAAGGATGAAAATGGTGATTTGAAATTAGATAGTTATATTCATTTTGAGAcaacaaatattacaaattacaattCCCAAGACAgcttagataaaaaaaatgtgttgacGCAAGATACTTTGTTGTACCCAATCGTCGACACAAATTTTTGCAAGCTCACCGAATCTAGAGTACCTGTAAATCCCGAACAAGCAGTCAAAGAAGAGATAAACTTGAATTTTGATGATGAAATAGGTTTTTCTGATCATTATGCTGATGAGGTTCAGTGTAACACACTAACTATAGAATTCAAAGCAGAAGAACCAGTAAAATGTGAAGAAAAGAAATTCAAATGCTCCTGCGGACTAACATTTACATTAAAGGACAAGTATAAGAgccatttaaaacaacaaaactgtaataagtacaaaaagatattagaaaaagtaaacaaaaacaaattagttaATGTAAAGAATGAAATAGAATGCATCGAGTGTCAACGCAAGTTCAAAACTGCGAACGCTTGGAGGATCCACCAACATGTACATCGTAACAAACACTTAACAGATAACAAATCTCTATCTCATGTCTGTAAATTCTGTTTATGTCAGTTCAAAACGGAGGCAGCGTTAGCATCTCACATACAGAAGCACGAGAAAACCGTAAACTCCAAAACAGAGACATACCAATGCTCATTCTGTTTGCGTAAATTCAAGAATAAAACATCCTTATCTGCTCACATGCAACGTCATGAAGAaactgataaaataaaacacgtctGCAAAATATGCAAAAGAGAATTTAAGTACAAAGCGTATTTAGAAAACCATATTGTAACGCTGCACTCAAGAAAGAATGGCATAAGTTGCGATGTTTGCGCACAAAGTTTTCCTAACACAGAGAGTTTAGAATTACATAAGGATAGTCATAAGAATGAGAAGAAGCATCGGTGTACCGTCTGCAATAAAGCATTCCTCATGTTATGTACGCTGAAGGAGCATATACGGACACATACGGGAGAAAAACCGTTCCTTTGCTCTCAGTGCGGACGAGGGTTCAGTCAGAAGACTAATTTGGCGCAGCACATGAGAAGACATCAGGGATTGAAGCCTTTTAAGTGTGAAAATTGTGATAAAGGATTCGTATCAAAAGGCGAACTAGACGCCCACACTCGCAAGCACAGCGGAGCACATCCCTTCGTCTGTGATGACTGCGGTAACGGTTTCACCACATCCAGCGCTTTAGTCAAACACAGACGAACACACACTGGAGAAAAACCGTACCAATGTGACCTCTGTCCTATGAGATTTGCTGCTTCTGGTACCTTGAAGAACCATCGTAGAACACATACTGGTGAACGACCGTTCCAATGCTCTTATTGCGAAAAGGCTTTTGTACAACGCAATGATTTGATCTCACACATCCGTTGTCATACGGGTGAGAAACCTTACATTTGTACTCACTGCGGTCAGTCGTTTAGAAAAGCTTCGGGGCTCAAGAGTCATGTTAAAATGCATGTGAAAGAGCCGGGGAGTATGCTGCAAGGTGTGAGTTTGATGTTGAACGGTATGCAGTGTGCGGAGCAGTga
Protein Sequence: MEITVPTFDKICRVCLTQCADMKSLFSKIDGDKRNLFEILAFTADINVKFEDSLPKQVCGECESVMCKADAFKRRCQNSETILNNIYQLSVSRGETSNIDKKCSIKDENGDLKLDSYIHFETTNITNYNSQDSLDKKNVLTQDTLLYPIVDTNFCKLTESRVPVNPEQAVKEEINLNFDDEIGFSDHYADEVQCNTLTIEFKAEEPVKCEEKKFKCSCGLTFTLKDKYKSHLKQQNCNKYKKILEKVNKNKLVNVKNEIECIECQRKFKTANAWRIHQHVHRNKHLTDNKSLSHVCKFCLCQFKTEAALASHIQKHEKTVNSKTETYQCSFCLRKFKNKTSLSAHMQRHEETDKIKHVCKICKREFKYKAYLENHIVTLHSRKNGISCDVCAQSFPNTESLELHKDSHKNEKKHRCTVCNKAFLMLCTLKEHIRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCDKGFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRTHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTHCGQSFRKASGLKSHVKMHVKEPGSMLQGVSLMLNGMQCAEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041986;
90% Identity: iTF_00274613;
80% Identity: -