Xrho031889.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970783.1:9940135-9943361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.39 39 6.0 1.6 6 21 216 231 213 232 0.92 2 13 0.00034 0.034 15.6 0.2 2 23 258 279 257 279 0.97 3 13 0.0056 0.57 11.8 3.1 1 23 292 314 292 314 0.97 4 13 2.3e-05 0.0023 19.3 3.0 1 23 325 347 325 347 0.99 5 13 0.0003 0.03 15.8 2.2 1 23 355 378 355 378 0.96 6 13 0.0039 0.4 12.3 0.1 2 23 385 406 384 406 0.95 7 13 0.0084 0.86 11.2 5.1 1 23 412 434 412 434 0.98 8 13 3.5e-07 3.6e-05 25.0 1.2 1 23 440 462 440 462 0.96 9 13 8e-06 0.00081 20.7 0.8 1 23 468 490 468 490 0.98 10 13 1.1e-06 0.00012 23.4 0.2 1 23 496 518 496 518 0.98 11 13 2.5e-05 0.0025 19.2 0.4 1 23 524 546 524 546 0.99 12 13 4.6e-05 0.0046 18.4 2.2 1 21 552 572 552 574 0.96 13 13 2.3e-06 0.00024 22.4 0.6 1 23 580 602 580 602 0.98
Sequence Information
- Coding Sequence
- ATGGAAATAAGTGTTCAGACGTTCGACAGAATATGCCGCGTCTGTTTAATAGAATGTGCCGACATGAAGTCTCTATTTACAAAGATGGATGGCGAAAAACGCAACTTGATCGAAATCCTTGCATTTACTGCTGATATTAATGTTAAATTCGAGGATAGTCTGCCAAAACAGGTTTGTGGTGAATGTGAGTCGGTCATGTGCAAGGCTGATGCATTTAAACGCCGCTGTCTAAATTCTGAGACGATTCTAAACAACATCTACCAAAACTCCTTGAACCATGGTAAAACATCGAGTATTGACAAAAAATGCTCGATAAAAGATGAAAATAGCGAAAAATTAAGCAATTATATTAGCTTTGAGACTTCAACTGTTACTAATTACAGTTCTCAAGACAGTTTTGataagaaaaatgttttaatacaaGATCCTTCATTATACCCAATCGCCGACGCTAGTTTTTGTAAGCTCACTGAATCTGCAGTTCCTGAAGGCTCCGAAAAACCTGTCAAAGAAGAAATAAACTTGAATTTTGATGATGGTCTATGCTTTCCTGATCACTACGATGATAGTGCACCGTGTGACACATTACCTATAGAATTTAAAGAAGAACCATTGAAAACTGAAGTAAAGAAATACACATGTTTCTGTAGACTATCATTTACTACTAAAGACAAGTATAAAAGCCATTTAAAGCAAGAAAACTGTAACAGGtacaaaaaatttttagaaaaagttaataaaagtaaattagtTACTGTAAAAAATGAGATAGAATGCGTTGAATGTAATCAAAAGTTCAAAACTCCAAATGCGTGGAGGATACACCAAGAAACCCATCGTAATGAACACTTAACTGAAAGCAAATCATTATTGCACGTTTGCAAATTGTGCGTATGTCAGTTCAAAACAGAGGCAGCATTAAAAACTCACATTCTAAAACATGAAAAcactgtaaacagcaaaacagAATCTTATCAATGCTCGTTCTGTTTAcgtaaattcaaaaataaaacttcgttAACTGCTCACATACAGCGCCATGAAGCAACGGACAACATAAAACACATTTGCAAATTATGTAAAAGAGAATTTAAATACAAAGCTTATTTAGAAAACCATGTATTAACAATGCATTCAAGAAAGAATGGTATAAGCTGTGAGATTTGCGCGCAAAGTTTTCCTAACGAAGACAGTTTAGAATTGCATAAAGACAGTCATAAGAATGAGAAAAAGCACCGCTGTACGGTTTGCAATAAAGCGTTTCTTATGTTGTGTACGTTAAAGGAGCATATGCGGACACATACTGGTGAGAAACCATTCTTATGCTCGCAATGCGGACGAGGGTTTAGCCAGAAGACTAATTTGGCACAGCACATGAGAAGACATCAGGGGTTGAAGCCTTTTAAGTGTGAGAATTGTGATAAGAGATTCGTATCAAAAGGCGAACTCGACGCGCACAACCGGAAACACAGCGGAGCGCACCCTTTTGTCTGTGATGACTGCGGTAACGGCTTCACAACCTCAAGCGCCCTAGTAAAACACCGTCGAATACATACCGGAGAAAAACCTTACCAGTGTGACCTCTGTCCAATGAGGTTCGCTGCATCAGGCACTTTGAAGAATCATCGAAGAACCCACACTGGTGAACGTCCCTTCCAATGCTCCTACTGTGAAAAAGCCTTCGTCCAACGTAACGATTTAATTTCCCATATCCGTTGCCACACCGGTGAGAAGCCATATATTTGTACTCAATGCGGTCAATCGTTCAGAAAAGCTTCCGGACTGAAAAGTCATGTTAAAATGCATGTGAAAGAGCCGGGGAACTTGCTGCAAGGTGTTAGTGTGATGTTGAATGGAATGCAGTGTGCTGAACAGTGA
- Protein Sequence
- MEISVQTFDRICRVCLIECADMKSLFTKMDGEKRNLIEILAFTADINVKFEDSLPKQVCGECESVMCKADAFKRRCLNSETILNNIYQNSLNHGKTSSIDKKCSIKDENSEKLSNYISFETSTVTNYSSQDSFDKKNVLIQDPSLYPIADASFCKLTESAVPEGSEKPVKEEINLNFDDGLCFPDHYDDSAPCDTLPIEFKEEPLKTEVKKYTCFCRLSFTTKDKYKSHLKQENCNRYKKFLEKVNKSKLVTVKNEIECVECNQKFKTPNAWRIHQETHRNEHLTESKSLLHVCKLCVCQFKTEAALKTHILKHENTVNSKTESYQCSFCLRKFKNKTSLTAHIQRHEATDNIKHICKLCKREFKYKAYLENHVLTMHSRKNGISCEICAQSFPNEDSLELHKDSHKNEKKHRCTVCNKAFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCDKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKSHVKMHVKEPGNLLQGVSVMLNGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041986;
- 90% Identity
- iTF_01532342;
- 80% Identity
- -