Xrho032771.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia rhomboidea
Gene Symbol
Kr
Assembly
GCA_963853795.1
Location
OY970784.1:10648503-10678463[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 6e-05 0.0062 18.0 3.5 1 23 240 262 240 262 0.98
2 10 0.11 12 7.7 1.4 1 23 269 291 269 291 0.97
3 10 0.073 7.5 8.3 0.1 1 23 295 318 295 318 0.97
4 10 0.12 13 7.5 7.3 1 23 325 347 325 348 0.96
5 10 1.6e-06 0.00017 22.9 0.5 2 23 354 375 354 375 0.98
6 10 2.4e-05 0.0024 19.2 3.8 1 23 381 403 381 403 0.99
7 10 0.00035 0.035 15.6 1.8 1 22 409 430 409 434 0.93
8 10 0.0043 0.44 12.2 0.4 1 23 471 494 471 494 0.92
9 10 3.5e-06 0.00036 21.9 1.0 1 23 503 525 503 525 0.98
10 10 4.1e-05 0.0042 18.5 0.4 1 23 531 554 531 554 0.96

Sequence Information

Coding Sequence
ATGGTGATATTCGTCTGTCTCCAGGTAACAGAGTCCGATGGCTTACCGCAGTGGCTGTGTTACGAATGTGCTACGCTTCTCCAGAAGTCGGTCAGGTTCAAGCATAAGGTGTTGCGAGCTCACACCATGCTGTACGAGTATCTTACAAGATGCGCTCCTTTCCCAATCGAGGGTCAGGATGAGGAGCTATCCAAATACGCAAGTCCTCATCTCAGTACGACGAGTGTGTTGACCATAGACATCGTTGGCAAGGGGAAGGCTGGCTACCATCAGGTCTTAGAGcaTGAGAAACAAGTCCAGCCCTCGGGGCTGGATGACATAGACAtacaaatgataaataaaatggaagaCGATGTTGTAAAGGAAGAAAACGGATTCTCTGACTATGAGGATAATATCACTTTGGATGAAATTAGGTCAGTAACAAAAATCACTGAGGATGACATAGCTTCACTTTTACAAGAAACGGGACGAGTTGACAATGTTGAGATCAAAGAAGAACCCGCAGTTAAAAAGAGGAAATCTAAAgaagttaaagttaaaaagaagaaaaaagaaatTGAAACGCCTCGAGAAGATGGCGCTCTAGTAGAAACTAAGGCTTCAATAAGAAAACCTATCGAACTGGATCCAACGAAAATCAGAATAATCACTTTGAACCCTGAGGAACAGATAAAGCAAAGAGAGgaagAAAGTAAAGCGAGCTTGAAATTCCCGTTCCAATGTAACTTATGCCATAAAGGGTTTAACTTTGAGTCTAAATTACAAAACCATATGGGCAAACACAGTCCGTCGCGCGGTCCATACGAGTGCAAACTGTGCCGCATGCACCTGCCCACGTCGTACAGCTACAACGTGCACTCGCTCATACACAACCGGCGCTACGAGTGCGTCGCGTGCGGCCGCCGGATGGTCGACAGATCCTCCATCATAGATCATTACAGGACACAACATGAAGGATTCCTAACATTATTTACCTGCCATTTATGTGGGAAAGTTTCAAAtaacaacaaaacacatagaGGCCACATGAGGAACCACCACAGTGGAGATAGGCCGAAATGTGACCAGTGCGGCAAGACCTTCATCAATAAAGACTCCTTAGTTGAACATCAGCAAATCCACCAAGGCATCAAGAACTACGAGTGCGCAATATGCAACAAGCGCTTTAGAACTAGAACTCAGATCAAGCACCACCAACTCACTCACACGGATGTCAAAGATTACTACTGCGTCGAGTGCGATGTTCGattcaaATCAGCGCACAGTCTCAGGCAGCATCTGCAAAAGAGTTTGAAACACAGGGATAAGCAGAGTTTGAAGTTCCCCTGTCCCCGCTGCCCGGCGCGCTTCTTGTGCGCGCGCGCGCTGGCCGCGCACGGCAGCGTGCAGCACGACGGCGTGCGCGCGCACGTGTGCGGGGAGTGCGGCGCCGCGCTGGCGTCGCGCTCGTCGCTCAGCAAGCACCGCCACGCCGTGCACCGCGGCGTGCGGCCTCCGCCCCGCCACGTGTGTGACACCTGCGGGAAGGCCTTCCGGGGTAAGAGCGTGCTAACGAACCACGTGCGCACGCACACGGGCGAGAAGCCCTTCGAGTGCGCCGAGTGTGGGCGCCGGTTCACGCAGAGGACGGCCATGCGCACGCACGTCAAACTGGTGCATTTGAAGCTCAGACGAACTGCTAAGGTGAAACCAGAGGTACCCTTGGAGGCGCAGTCCCCGAAGCTGGACGTGTTCAAACCCGAGCCACTACTGGAGCCCTGGCGGCAGCCTTGCGACGTGTACTTCCATGTCACCGCGGGACCCTGA
Protein Sequence
MVIFVCLQVTESDGLPQWLCYECATLLQKSVRFKHKVLRAHTMLYEYLTRCAPFPIEGQDEELSKYASPHLSTTSVLTIDIVGKGKAGYHQVLEHEKQVQPSGLDDIDIQMINKMEDDVVKEENGFSDYEDNITLDEIRSVTKITEDDIASLLQETGRVDNVEIKEEPAVKKRKSKEVKVKKKKKEIETPREDGALVETKASIRKPIELDPTKIRIITLNPEEQIKQREEESKASLKFPFQCNLCHKGFNFESKLQNHMGKHSPSRGPYECKLCRMHLPTSYSYNVHSLIHNRRYECVACGRRMVDRSSIIDHYRTQHEGFLTLFTCHLCGKVSNNNKTHRGHMRNHHSGDRPKCDQCGKTFINKDSLVEHQQIHQGIKNYECAICNKRFRTRTQIKHHQLTHTDVKDYYCVECDVRFKSAHSLRQHLQKSLKHRDKQSLKFPCPRCPARFLCARALAAHGSVQHDGVRAHVCGECGAALASRSSLSKHRHAVHRGVRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFECAECGRRFTQRTAMRTHVKLVHLKLRRTAKVKPEVPLEAQSPKLDVFKPEPLLEPWRQPCDVYFHVTAGP