Basic Information

Insect: Mythimna lalbum
Gene Symbol: -
Assembly: GCA_949319445.1
Location: OX439374.1:11090238-11117338[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00065 0.064 14.7 6.5 1 23 252 274 252 274 0.98

2 11 0.17 17 7.1 0.6 1 23 281 303 281 303 0.96

3 11 0.81 80 5.0 0.1 1 23 307 330 307 330 0.97

4 11 0.13 13 7.5 7.3 1 23 337 359 337 360 0.96

5 11 1.7e-06 0.00016 22.9 0.5 2 23 366 387 366 387 0.98

6 11 2.9e-06 0.00029 22.1 3.8 1 23 393 415 393 415 0.99

7 11 0.00031 0.03 15.7 1.6 1 21 421 441 421 446 0.93

8 11 0.36 35 6.1 0.6 1 23 454 477 454 477 0.96

9 11 0.0055 0.54 11.8 0.3 1 23 483 506 483 506 0.92

10 11 3.6e-06 0.00035 21.8 1.0 1 23 515 537 515 537 0.98

11 11 1.3e-05 0.0013 20.1 0.4 1 23 543 566 543 566 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00065	0.064	14.7	6.5	1	23	252	274	252	274	0.98
2	11	0.17	17	7.1	0.6	1	23	281	303	281	303	0.96
3	11	0.81	80	5.0	0.1	1	23	307	330	307	330	0.97
4	11	0.13	13	7.5	7.3	1	23	337	359	337	360	0.96
5	11	1.7e-06	0.00016	22.9	0.5	2	23	366	387	366	387	0.98
6	11	2.9e-06	0.00029	22.1	3.8	1	23	393	415	393	415	0.99
7	11	0.00031	0.03	15.7	1.6	1	21	421	441	421	446	0.93
8	11	0.36	35	6.1	0.6	1	23	454	477	454	477	0.96
9	11	0.0055	0.54	11.8	0.3	1	23	483	506	483	506	0.92
10	11	3.6e-06	0.00035	21.8	1.0	1	23	515	537	515	537	0.98
11	11	1.3e-05	0.0013	20.1	0.4	1	23	543	566	543	566	0.96

Sequence Information

Coding Sequence: ATGTTTAGTGCTATTGTGTTCGAAGCGTTTTTTAAGGATCTAGCCGATATTAATGTAACGGAGTCTGACGGTCTGCCACAATGGTTGTGCTACGAGTGCGCCACCCTCCTACAGAAGTCTGTTCGCTTCAAGCACAAGGTCGTGAGGGCGCACACGATGCTCTACGAGTACCTTACACGCTGTGCACCGTTCCCGATCGAGCCCCAGGATGAGGAGTTGTCGAAGTACTCCAGCCCCCACCTGAGCACCACCAGCGTGTTGACCATTGACATCGTGGGCAGGGGCAAGGCGGGCTACCAGCAGGTCTTAGAGCACGAGAAGCACGTCCAGCCGTCCGGGTTGGATGACATCGACATCCAGTTCATCAACAAGATGGACGACGAGATAGTCAAGGAAGAGCATAGCTTCTCAGATTATGAGGACAACATGACACTAGAAGAATTCAGatCCGTAGCAACAAAAATAACGGATGACGATCTCGTGTCCTTACTGCAGGAGTCTGGGCAGGTGGAAGTGAAGGAGGAAGTCGTCAGCAAGAAGaggaaaaccaaaaataaacaagttaaaACCAAAAAGAAGAAGTTACATGTGGACTCAACTCTTGAAAATGAGAACGACAGTCCAGCGGAAACCAAGTCCTCAATCAGGAAACCCGTGGAACTGGACCCCACCAAGATCAGGATAGTAACCCTCAACCCTGAGGAACAGATCAAACAGAGAGAGGAAGAAAGTAAGGCTGGCTTGAAGTTCCCCTTCCATTGTAATTTGTGCCATAAGGGGTTCAACTTTGAGTCCAAATTACAGAATCATATGAGCAAGCATAGTCCGTCCCGCGGGCCGTACGAGTGCAAGCTGTGTCGCATGTACCTGCCGACCTCGTACAGCTACAACGTGCACTCGCTCATCCACCTCCGCCGCTACGAGTGCGTCGCGTGCGGACGACGCATGATCGACCGCCCCTCCATCATAGACCACTacagAACTCAACACGAAGGCTTTCAGACAATATTCACGTGCCATCTCTGTGGGAAAGTCTCCAATAACAACAAGACGCATCGCGGCCACATGAGGAACCACCACAGCGGAGACAGGCCCAAGTGCGACCAGTGCGGGAAGACCTTCATCAACAAGGACTCCTTGGTGGAGCATCAGCAGATCCACCAGGGCATCAAGAACTACGAGTGCTCGATCTGCGGCAAGCGGTTCCGCACCAGGACGCAGATCAAGCACCACCAGCTCACGCACACCGACGTCAAGGACTACTACTGCGTCGAGTGCGACGTCAGATTCAAGACGGCGCACAGTTTAAGACAACATCTGCTGAAAAGTCTGAAACATCGAGATAAACAGAGCTTGAAGTTCACGTGCTCGCGCTGTACGGCGCGCTTCCCGTGCGCGCGCGCGCTGGCGGAGCACGTGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCGGCGCTGGCGTCGCGCTCGTCGCTCAGCAAGCACACGCACGCCGTGCACCAGGGGCTGCGGCCGGCGCGCCGCCACGTGTGCGACACCTGCGGGAAGGCCTTCCGGGGTAAGAGCGTGCTAACGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGAGTGCGGCGAGTGCGGGCGCCGCTTCACGCAGCGCACGGCCATGCGCACGCACGTCAGGCTCGTGCACCTCAAGCTGCGCCGCGCGCCCAAGATCAAGCCGGAGCTGCCGCTGGAGAGCTCAGCTCACGCGCTGGAGGCGCTGAAGCCGGGCGCGCTGGCCGAGCCCTGGCGCGCCCCCTGCGACGTGTACTTCCGCGTCACGGCCGGCTACTGA
Protein Sequence: MFSAIVFEAFFKDLADINVTESDGLPQWLCYECATLLQKSVRFKHKVVRAHTMLYEYLTRCAPFPIEPQDEELSKYSSPHLSTTSVLTIDIVGRGKAGYQQVLEHEKHVQPSGLDDIDIQFINKMDDEIVKEEHSFSDYEDNMTLEEFRSVATKITDDDLVSLLQESGQVEVKEEVVSKKRKTKNKQVKTKKKKLHVDSTLENENDSPAETKSSIRKPVELDPTKIRIVTLNPEEQIKQREEESKAGLKFPFHCNLCHKGFNFESKLQNHMSKHSPSRGPYECKLCRMYLPTSYSYNVHSLIHLRRYECVACGRRMIDRPSIIDHYRTQHEGFQTIFTCHLCGKVSNNNKTHRGHMRNHHSGDRPKCDQCGKTFINKDSLVEHQQIHQGIKNYECSICGKRFRTRTQIKHHQLTHTDVKDYYCVECDVRFKTAHSLRQHLLKSLKHRDKQSLKFTCSRCTARFPCARALAEHVRVQHEGVRAHVCGECGAALASRSSLSKHTHAVHQGLRPARRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFECGECGRRFTQRTAMRTHVRLVHLKLRRAPKIKPELPLESSAHALEALKPGALAEPWRAPCDVYFRVTAGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01533326;
90% Identity: iTF_01029542;
80% Identity: -