Xict026670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthia icteritia
Gene Symbol
-
Assembly
GCA_949128155.2
Location
OX421950.2:4283895-4300559[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0024 0.26 13.0 0.8 2 23 357 378 356 378 0.94
2 12 0.041 4.3 9.1 1.7 2 23 386 408 386 408 0.95
3 12 0.0064 0.68 11.7 0.7 1 23 412 434 412 434 0.96
4 12 0.94 1e+02 4.8 1.2 1 23 439 462 439 462 0.97
5 12 0.00018 0.019 16.5 0.5 1 23 466 489 466 489 0.95
6 12 0.79 85 5.1 0.4 1 22 503 524 503 532 0.93
7 12 0.018 1.9 10.3 0.5 3 23 548 569 547 569 0.96
8 12 2.1 2.2e+02 3.7 2.6 3 23 586 607 585 607 0.94
9 12 3.7e-05 0.0039 18.7 1.0 1 23 622 644 622 644 0.98
10 12 6.9 7.4e+02 2.1 0.4 2 20 650 668 649 671 0.88
11 12 0.0012 0.12 14.0 4.9 1 23 677 699 677 699 0.98
12 12 5.2e-06 0.00055 21.4 1.3 1 23 705 728 705 728 0.96

Sequence Information

Coding Sequence
atggtgTCGTATTGTTGTGTTAATGGTTGCGGTAAcaccagtaaaaataaaaataaagatcctAACTTAGCGGTATCGTTTCACGTGTTTCCTGCAAATAAGGAGCTTAGAAGTAAATGGCTGAGAGCTATAGGACGTCCAAACTGGTTGCCCTCAAACCATACTCGAATTTGTAGCGCGCATTTCGTCTACGATCAGATCAACCACGATAGCTGCAAAATAAGAATAAAGGATGATGCCGTTCCTGTTTTGTTATTACCTCTTAATTCCAACTTTGAAGCATCTAACGTGGAAGCTTGCAGGATATGTTTGGCTGCAGATGTCAAGCTGTACAGTCTACAAGACACGCACCTGGGAACTTGTATGAAGTCTATTGCTGGATTAACtCTGAATGGAATGGACTTGGAAGATATGCCACAATATGTTTGCTACCAATGTGCCCCAAGCCTAATAAAATGCAAACAACTCATTGAGAAATGTGTCACCTCTCAGGCAACTTTGCTGGATATATTTGCTAAGAATGGACAGATATCAAAAGATCTCATAAAAGAACAAAATAGATCCCAACCAATCTTGAAGTCATTAGAGTACAATTTCGTACTAAATGATTATTTGCTCAAATATGATGATGGCAACACTACTTCGCTACATACAACAGAAGATTCCATAGACAATGATCGTAGTTATTTTATAAGTGAAGATAATACAAATAATGATGCTGACACGCATCTCAATACTAAGGAATTTCAAATTGAAGCAAATGAAACCGAATTCTTTGGAGTTAATGATGATGTGGTGGTGgatgaaattaaaatgaattctCCTGATGATTTTGTTGCTAATGGCGATCTCAGTAAGGATTTGAGTTCAAATGCACAGAAAGAGGaagaattTGAAAGTCAAGTAATACACGCAAAAAAGATGTCGGCAGAAAAAAGCCTAGAATTAACACCAGATGAAACAAATATGCTGAAATACTACCATATTGTCCAATTATCAtTACATGAACAGGTAAAAGAATGGGAGAGGAATACAGCGATTCGTCCACTAACAAGTGACAGTAATCTAAAATGTGAGATCTGTAACAAATCATTCGCGAATGTCAACTCTTATCGCGGTCATGTTATACATCACGAGCCAAGTTTTGGTCGAGCGCAGTGCCATATATGCAAGCTACGGTTTAGAAGCACTGCGTTGGCGACTTCACACGCCAAACGCGCACACAGCAAGAAGTTCTTCTGCAAAATGTGCCCCAAggcttttaataatgtAATGGTAGCCAAAAAGCACCAGCGCTGGCATTCAGGCTACCTATATAAATGCGACTCCTGTCCGTTCTCCACTCTACACGAGTCGTCACTGGGCATTCACAAGCGACGCGCGCACGCTAATGCGCATGCGTGTGCGCTGTGCGGACGAGCGTATAGTACACGGAGAGGATTGGAAGCGCATATACATACCGCACATAGTAATATTGAGATTAAAGACATCAAAGTCAGTAAGGAGTATCGTTGTGAACAATGCGCTATCGACTTTGCGTCGGAAGGCGCAAGACGAATTCACATACTTACATCCATGCAACATAGGAAGAAACATGATTTGTGCGACACAGCAGTCCAAGACCCAAATCTACGCAACATTTGCGAGAAGTGCGGCGTAGAATGTGCTACGGCCAGAGAGTTGTCTTGGCACAAGAAGTCGGAGCACCCTCGCCCTCGTAGTAAAGACCATCCGTCGCGAGGATATCCTAAAGACTGCGAACTTTGCGGTGAAACGCTTACAAACCCCAAGAAACATTGGCACCATGTTCGACAGAAACATCCCGAGAACACAGATACCTACAAAAGGGTTCAAACCATCACTTATATTTGTGATACTTGCGGGAAAGGCTTTCAGAACTCGACAAAACTCCGCCTACATCAACTTCGCCACCGCAGCCCCTCAGTGCGCTGCCCTTGCTGCCTGCGCCTGTTCTACGACAAGTACGCGCTGGCCGCGCACGCGCCCACACATGATGCCGACAGGCCGCACCAGTGCCGCACGTGTGGGGCGGCATTCAAGCAGCGCTGTAACTTAGACAGGCATTTTAGAGTTCATTCAGACATCGCTACATTCGAGTGCACGATTTGCGGCAAAAAGTTCAAATACTCGACAAGCTTGAAACTTCACGTAAACTACGTGCATAACAAATTACCCTACCCGAAAAGGAAGAAAAGAATCAAATCCGTGAAGAATGCGAGTGATTCGTAA
Protein Sequence
MVSYCCVNGCGNTSKNKNKDPNLAVSFHVFPANKELRSKWLRAIGRPNWLPSNHTRICSAHFVYDQINHDSCKIRIKDDAVPVLLLPLNSNFEASNVEACRICLAADVKLYSLQDTHLGTCMKSIAGLTLNGMDLEDMPQYVCYQCAPSLIKCKQLIEKCVTSQATLLDIFAKNGQISKDLIKEQNRSQPILKSLEYNFVLNDYLLKYDDGNTTSLHTTEDSIDNDRSYFISEDNTNNDADTHLNTKEFQIEANETEFFGVNDDVVVDEIKMNSPDDFVANGDLSKDLSSNAQKEEEFESQVIHAKKMSAEKSLELTPDETNMLKYYHIVQLSLHEQVKEWERNTAIRPLTSDSNLKCEICNKSFANVNSYRGHVIHHEPSFGRAQCHICKLRFRSTALATSHAKRAHSKKFFCKMCPKAFNNVMVAKKHQRWHSGYLYKCDSCPFSTLHESSLGIHKRRAHANAHACALCGRAYSTRRGLEAHIHTAHSNIEIKDIKVSKEYRCEQCAIDFASEGARRIHILTSMQHRKKHDLCDTAVQDPNLRNICEKCGVECATARELSWHKKSEHPRPRSKDHPSRGYPKDCELCGETLTNPKKHWHHVRQKHPENTDTYKRVQTITYICDTCGKGFQNSTKLRLHQLRHRSPSVRCPCCLRLFYDKYALAAHAPTHDADRPHQCRTCGAAFKQRCNLDRHFRVHSDIATFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKKRIKSVKNASDS