Basic Information

Insect: Amphipoea oculea
Gene Symbol: -
Assembly: GCA_945859585.1
Location: CAMAOF010000023.1:2477191-2496285[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.087 7 7.7 3.1 2 23 347 368 346 368 0.93

2 11 0.021 1.7 9.6 0.6 2 23 376 398 376 398 0.95

3 11 0.0021 0.17 12.8 0.6 1 23 402 424 402 424 0.97

4 11 0.23 18 6.4 1.3 1 23 429 452 429 452 0.97

5 11 0.083 6.6 7.7 0.1 1 23 456 479 456 479 0.95

6 11 0.19 15 6.6 0.5 1 22 493 514 493 522 0.93

7 11 0.0055 0.44 11.4 0.8 3 23 538 559 537 559 0.96

8 11 0.00033 0.027 15.3 2.7 2 23 613 634 612 634 0.96

9 11 0.013 1 10.3 1.3 2 23 640 661 639 661 0.96

10 11 0.0022 0.18 12.7 4.3 1 23 667 689 667 689 0.98

11 11 3.7e-06 0.0003 21.4 1.3 1 23 695 718 695 718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.087	7	7.7	3.1	2	23	347	368	346	368	0.93
2	11	0.021	1.7	9.6	0.6	2	23	376	398	376	398	0.95
3	11	0.0021	0.17	12.8	0.6	1	23	402	424	402	424	0.97
4	11	0.23	18	6.4	1.3	1	23	429	452	429	452	0.97
5	11	0.083	6.6	7.7	0.1	1	23	456	479	456	479	0.95
6	11	0.19	15	6.6	0.5	1	22	493	514	493	522	0.93
7	11	0.0055	0.44	11.4	0.8	3	23	538	559	537	559	0.96
8	11	0.00033	0.027	15.3	2.7	2	23	613	634	612	634	0.96
9	11	0.013	1	10.3	1.3	2	23	640	661	639	661	0.96
10	11	0.0022	0.18	12.7	4.3	1	23	667	689	667	689	0.98
11	11	3.7e-06	0.0003	21.4	1.3	1	23	695	718	695	718	0.96

Sequence Information

Coding Sequence: ATGGTGTCATATTGCTGTGTTAATGGTTGCGGTAACACCAGTAAAAATAAAAAGCGAAATCCAAATTCAGCGGTATCGTTTCACATGTTTCCTGCAAATAAGGAACTTAGAAGTAAATGGCTGAGAGCTATAGGACGTCCAAACTGGTCGCCTTCGAACCATGCTCGAATTTGTAGCGCGCATTTCACCTACGAACAAATCAACCACGATGGCTGCAAAATAAGAATAAAGGATGATGCTGTACCTGTTTTATTATTACCTCTAAACTCCAACTTTGAAGCATCTAATGTGGAAGTTTGCAGAATTTGTTTGGCCATAGACGTCAAGCTGTACAGTCTACAAGATACACACCTGGGGACATGTATGAAGTCTATTGCTGGATTAAGTCTAAATGGAATGGACTTGGAAGATATGCCACAATACGTTTGCTGCCAATGTGCACCAAGCCTGGTAAAATGCAACCAACTCATAGAGAAATGTATTACCTCTCAGGCAACTTTAATGGATATATTCGCTAAGAATGGACAGATATCAAAAGATCTGATAAAAGAAAAAAATAGATCCCAACCGATCTTGGAGTCATTAGAGAACAGTTTTGTATTAAACGATCATTTGCTGAAACAAGATGACGACAACACTCCTTCGCTATTTACTACAGAAGATTCCATAGACAATGATCGTAGTGATTTTAAAAGTGAAGATGGTCCAAATACAGACACGCATCTCAATAATAAGGAATGTCAAGTTGAAGCAAATGAAACTGAATTTCATGTAGTTAATGATGAGGTGGTGGAAAGAATTAAAATAATTTCTTCTGGTGATCTCCATAAGGATTCGAGTTCAAATGCTCTGAAAGAGGAATTGGAAATTCAAGATGTGCATACGAAAAATATGTCTGCAGGGAAAAACCTTGAATTAACTCCAGATGAAACAAATATGCTGAAATACTTCGATATTGTCCGATTATCATTACATGAACAGGTTCAAGAATGGGAAAAGAGTACAGTTGGTCGTCCATTAACAAGTGACACTAACCTACAATGTGACATCTGTCAAAAATCATTCGCGAGTGTCAACTTTCATCGCGTTCATATTAGACATCACGAGCCGAGTTTTGGTCGAGCGCAGTGCCCTATTTGCAAGCTAAGATTTAAAAGCACTGCCTTGGCGACTTCGCACTCCAAACGCGCACACAGCAAGAAATTCTACTGCAAGATGTGTCCGAAGGCTTTTAACAATGTAATGGTAGCCAAAAAGCATCAGCGCTGGCATTCAGGATACCTATACAAATGCGATACATGTCCGTTCTCAACGCTACACGAGTCTTCACTGGGCATCCACAAGCGACGCGCGCACGCTAACGCGCATGCGTGCGCGCTGTGCGGACGTGCCTATGGCACAGGGAGAGGATTGGACGCGCATATACATACCGCACATAGTAATGTTAAGGTTAAAGACATTAAAGTCAGTAAGGAGTATCGTTGTGAACAGTGCAGCATCGACTTTGCGTCGGAAGGCGCAAGACGATTACACATACTTACATCCATTCAACATAGGAAGAAGCATGATTTGTGTGACACCGTCGTCCAAGAGCCAAACCTACCCAATATTTGCGAGAAGTGCGGCGTAGAATGTTCTACGGCCAGAGAGTTGTCTTGGCACAAGAAGTCGGAGCACCCTCGCCCTCGAAGTAAAGACCATCCGCCGCGAGGATATCCGAAAGACTGCGAACTTTGCGGTGACACGCTTCCCAACCGCAAGAAACACTGGCACCACGTTCGAAAGCAGCATCCCGAGAACACAGAGACCTACAAACGGGTTCAACCCATCACTTGTATTTGTGATACTTGCGGGAAAGGCTTTCAGAACTCAACAAAGCTCCGCCTCCACCAACTCCGGCACCGCAGCCCGTCGGTGCGCTGCCCGTGCTGCCCGCGCCAGTTCTACGACAAGTACGCGCTGGCCGCGCACGCGCACACACACGACACCGACAGGCCGCACCAGTGCCGCACGTGTGGCGCGGCCTTCAAGCTGCGCTGTAACTTGGACAGGCATTATAGAGTTCATTCAGACATCGCTACATTCGAGTGCACGATTTGCGGCAAAAAGTTTAAATACTCGACAAGCTTGAAACTTCACGTGAACTATGTGCATAACAAGTTACCTTACCCGAAAAGGAAGAAAAGAATCAAATCCGTGAAGAATGCAAGTGATTTGTAA
Protein Sequence: MVSYCCVNGCGNTSKNKKRNPNSAVSFHMFPANKELRSKWLRAIGRPNWSPSNHARICSAHFTYEQINHDGCKIRIKDDAVPVLLLPLNSNFEASNVEVCRICLAIDVKLYSLQDTHLGTCMKSIAGLSLNGMDLEDMPQYVCCQCAPSLVKCNQLIEKCITSQATLMDIFAKNGQISKDLIKEKNRSQPILESLENSFVLNDHLLKQDDDNTPSLFTTEDSIDNDRSDFKSEDGPNTDTHLNNKECQVEANETEFHVVNDEVVERIKIISSGDLHKDSSSNALKEELEIQDVHTKNMSAGKNLELTPDETNMLKYFDIVRLSLHEQVQEWEKSTVGRPLTSDTNLQCDICQKSFASVNFHRVHIRHHEPSFGRAQCPICKLRFKSTALATSHSKRAHSKKFYCKMCPKAFNNVMVAKKHQRWHSGYLYKCDTCPFSTLHESSLGIHKRRAHANAHACALCGRAYGTGRGLDAHIHTAHSNVKVKDIKVSKEYRCEQCSIDFASEGARRLHILTSIQHRKKHDLCDTVVQEPNLPNICEKCGVECSTARELSWHKKSEHPRPRSKDHPPRGYPKDCELCGDTLPNRKKHWHHVRKQHPENTETYKRVQPITCICDTCGKGFQNSTKLRLHQLRHRSPSVRCPCCPRQFYDKYALAAHAHTHDTDRPHQCRTCGAAFKLRCNLDRHYRVHSDIATFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKKRIKSVKNASDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526557;
90% Identity: iTF_00758235;
80% Identity: iTF_00071490;