Basic Information

Insect: Agrochola lota
Gene Symbol: -
Assembly: GCA_947364205.1
Location: OX376237.1:4123823-4141189[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0034 0.26 12.3 1.1 2 23 354 375 353 375 0.93

2 12 0.05 3.8 8.6 1.2 2 23 383 405 383 405 0.95

3 12 0.0025 0.19 12.7 0.5 1 23 409 431 409 431 0.96

4 12 2.5 1.9e+02 3.3 1.9 1 23 436 459 436 459 0.97

5 12 0.00087 0.066 14.2 0.5 1 23 463 486 463 486 0.95

6 12 0.16 12 7.1 0.5 1 22 500 521 500 529 0.94

7 12 0.015 1.1 10.3 0.5 3 23 545 566 544 566 0.96

8 12 4.7 3.5e+02 2.4 3.3 3 23 583 604 582 604 0.95

9 12 4.3e-05 0.0032 18.3 1.1 1 23 619 641 619 641 0.97

10 12 0.52 39 5.4 0.3 2 20 647 665 646 668 0.89

11 12 0.00027 0.021 15.7 4.8 1 23 674 696 674 696 0.98

12 12 4.3e-06 0.00033 21.4 1.3 1 23 702 725 702 725 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0034	0.26	12.3	1.1	2	23	354	375	353	375	0.93
2	12	0.05	3.8	8.6	1.2	2	23	383	405	383	405	0.95
3	12	0.0025	0.19	12.7	0.5	1	23	409	431	409	431	0.96
4	12	2.5	1.9e+02	3.3	1.9	1	23	436	459	436	459	0.97
5	12	0.00087	0.066	14.2	0.5	1	23	463	486	463	486	0.95
6	12	0.16	12	7.1	0.5	1	22	500	521	500	529	0.94
7	12	0.015	1.1	10.3	0.5	3	23	545	566	544	566	0.96
8	12	4.7	3.5e+02	2.4	3.3	3	23	583	604	582	604	0.95
9	12	4.3e-05	0.0032	18.3	1.1	1	23	619	641	619	641	0.97
10	12	0.52	39	5.4	0.3	2	20	647	665	646	668	0.89
11	12	0.00027	0.021	15.7	4.8	1	23	674	696	674	696	0.98
12	12	4.3e-06	0.00033	21.4	1.3	1	23	702	725	702	725	0.96

Sequence Information

Coding Sequence: ATGGTGTCGTATTGCTGTGTTAATGGTTGCGGTAATAACAGTAAAAATAAAAATAAAGATCCTAATTCAGCGGTATCGTTTCATGTGTTTCCTGCAAATAAGGAGCTCAGAAGTAAATGGTTGAAAGCTATAGGACGTCCAAACTGGTCACCCTCGAACCATGCTCGGATTTGTAGTGCGCATTTCGTATACGATCAGATCAACCACGATAGCTGCAAAATAAGAATAAAGGATGATGCCGTTCCTGTTTTGTTATTACCTCTAAATTCCAATTTTGAAGCATCTAGCGTGGAAGCTTGCAGGATATGTTTGGCTGCTGATGTCAAACTGTACAGTCTACAAGACACGCACCTGGGGACTTGTATGAAGTCTATTGCTGGATTAACTCTAAATGGAATGGACTTGGAAGATATGCCACAATATGTTTGCTACCAATGTGCACCAAGCCTAATAAAATGCAAACAACTCATTGAGAAATGTGTCACCTCTCAGGCAACTTTATTGGATATATTTGCTAAGAATGGACAGATATCAAAAGATCTGATAATAGAACAAAATAGATCCCAACCAATCTTGAAGTCATTAGAGAACAGTTTTGTCTTAAATGATTATTTGCTCAAATATGATGATGGCAGCAATACTGCGCTATTTACAACAGAAGATTCCATAGACAATGATCGTAGTTATTTTAAAAGTGAAGATGATACAAATACTGATGCTGACACGCATCTCAATACTAAGGAATGTCAAGTTGAAGCAAATGAAACTGGCTTACATGATGGTGTGGTGGTGGATGAATTTAAAAGTAATTCTTCTGATGATGTTATTACAAATAGTGATCTCAGTAAGGCTTTGAGTTCAAATGCGCAGAAAGAGAAACAATTTGAAAGTCAATTAATGCACACAAAACATATGTCTAGACAAGAAAGCCTTGAATTAACTCCAGATGAAACAAATATGCTGAAATACTTCGATATTGTCCAATTGTCATTACATGAACAGGTAAAAGAATGGGAGAATAGTACAGTTAGTCGTCCACTAAACTGTGACACTAATCTACAATGTGAGATCTGTAACAAATCATTCGTGAATGTCAACTCTTATCGCGGTCATGTTACACACCACGAGCCGAGTTTTGGTCGAGCGCAATGCCATATATGCAAGCTACGGTTTAAAAGCATTGCGTTGGCGACTTCACACGCCAAACGCGCACACAGCAAGAAATTCTTCTGCAAAATATGCCCTAAGGCTTTTAATAATGTAATGGTAGCCAAAAAGCATCAGCGCTGGCATTCAGGCTTCTTATACAAATGCGACTCATGTTCGTTCTCAACGCTACACGAGTCGTCACTGGGCATTCACAAGCGACGCGCGCACGCTAACGCGCATGCGTGCGCGCTGTGCGGACGAGCTTATAGTACACGGAGAGGATTGGATGCTCATATACATACCGCACATAGAAATATTAAGGTTAAAGACATCAAAGTCAGTAAGGAGTATCGTTGTGAGCAGTGCAGCATCGACTTTGTGTCGGAAGGCGCAAGACGAATTCACATACTTACATCCATTCAACATAGGAAGAAACATGATTTGTGCGACACGGCGGTCCAAGACGCAAACCTTGCCAACATTTGCGAGAAGTGCGGCGTAGAATGTGCTACAGCCAGAGAGTTGTCTTGGCACAAGAAGTCGGAGCACCCTCGTCCTCGTAGTAAAGATCATCCGTCACGCGGATATCCTAAAGACTGCGAACTTTGCGGTGAAACGCTTCCCAACCGCAAGAAACATTGGCACCATGTTCGAAAGAAACATCCCGAGAACACAGATACGTACAAACGGGTTCAAACCATCACATTTATTTGTGATACTTGCGGGAAAGGCTTTCAGAACTCGACAAAACTCCGCCTACACCAACTCCGCCACCGCAGCCCCTCAGTGCGCTGCCCTTGCTGCCCGCGCCTGTTCTACGACAAGTACGCGCTGGCCGCGCACGCACCCACACACGATGCCGACAGGCCGCACCAGTGCCGCACGTGTGGGGCGGCCTTCAAGCAGCGCTGTAACTTAGACAGGCATTATAGAGTTCATTCAGACATCGCCATATTCGAGTGCACGATTTGCGGCAAAAAGTTCAAATACTCGACAAGCTTGAAACTTCACGTGAACTACGTGCATAACAAGTTACCTTACCCGAAAAGGAAGGAAAGAATCAAATCCGTGAAAAATGCGAGTGATTCGTAA
Protein Sequence: MVSYCCVNGCGNNSKNKNKDPNSAVSFHVFPANKELRSKWLKAIGRPNWSPSNHARICSAHFVYDQINHDSCKIRIKDDAVPVLLLPLNSNFEASSVEACRICLAADVKLYSLQDTHLGTCMKSIAGLTLNGMDLEDMPQYVCYQCAPSLIKCKQLIEKCVTSQATLLDIFAKNGQISKDLIIEQNRSQPILKSLENSFVLNDYLLKYDDGSNTALFTTEDSIDNDRSYFKSEDDTNTDADTHLNTKECQVEANETGLHDGVVVDEFKSNSSDDVITNSDLSKALSSNAQKEKQFESQLMHTKHMSRQESLELTPDETNMLKYFDIVQLSLHEQVKEWENSTVSRPLNCDTNLQCEICNKSFVNVNSYRGHVTHHEPSFGRAQCHICKLRFKSIALATSHAKRAHSKKFFCKICPKAFNNVMVAKKHQRWHSGFLYKCDSCSFSTLHESSLGIHKRRAHANAHACALCGRAYSTRRGLDAHIHTAHRNIKVKDIKVSKEYRCEQCSIDFVSEGARRIHILTSIQHRKKHDLCDTAVQDANLANICEKCGVECATARELSWHKKSEHPRPRSKDHPSRGYPKDCELCGETLPNRKKHWHHVRKKHPENTDTYKRVQTITFICDTCGKGFQNSTKLRLHQLRHRSPSVRCPCCPRLFYDKYALAAHAPTHDADRPHQCRTCGAAFKQRCNLDRHYRVHSDIAIFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKERIKSVKNASDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526557;
90% Identity: iTF_00037882;
80% Identity: iTF_00037882;