Ctra032269.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991038.1:5161753-5177239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.17 13.9 0.7 2 23 351 372 350 372 0.96 2 12 0.082 11 8.2 0.7 2 23 380 402 380 402 0.96 3 12 0.0029 0.39 12.8 0.6 1 23 406 428 406 428 0.97 4 12 0.94 1.3e+02 4.8 1.2 1 23 433 456 433 456 0.97 5 12 0.0011 0.14 14.1 0.7 1 23 460 483 460 483 0.95 6 12 0.025 3.4 9.8 0.3 1 22 497 518 497 526 0.94 7 12 0.025 3.4 9.8 2.5 3 23 542 563 541 563 0.96 8 12 5.5 7.4e+02 2.4 1.2 3 23 580 601 579 601 0.94 9 12 0.00043 0.059 15.3 1.9 2 23 617 638 616 638 0.96 10 12 0.0011 0.14 14.1 0.0 2 23 644 665 643 665 0.95 11 12 4.4e-05 0.0059 18.5 1.1 1 23 671 693 671 693 0.98 12 12 5.1e-06 0.0007 21.4 1.3 1 23 699 722 699 722 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCGTATTGCTGTGTTAATGGTTGCGGTAAcaccagtaaaaataaaaataaaaatcctaaCTCAGCGGTAGGGTTTCACGTGTTTCCTGCAAATAAGGAGCTAAGAAGTAAATGGTTGAGAGCTATAGGCCGCCCAAACTGGTCGCCTTCGAACCATGCGCGAGTTTGTAGCGCGCATTTTACCTATGATCAGATCAACCatgctagttttaaaataagaataaagGATGATGCCGTTCCTGTTTTGTCATTACCTctaAACTCTAACTTTGAGGCATCTAACTTGGAAGCTTGCAGGATATGTTTGGCTACAGACGTCAAGCTGTACAGTCTCCAAAACACACATCTGGGGACTTGTATGAAGTCTATTGCTGGTTTAAGtCTAAATGGCATGGACTTGGAAGATATGCCACAATATGTTTGCTACCAATGTGCTCCAAGCCTAATAAAATGCAAACAACTCATTGAGAAATGTATCACCTCTCAGGCGATTTTACTGGATATATTTGCTAAGAATGGACAGATATCAAAAGATCtgataaaagaacaaaatagaTCCCAACCAAACTTGAAGTCATTAGAGAACAGTTTTGTATTAAATGATTACTTGCTCAAATATGATGATGGGAACAATACTTCACTATTTACTACAGCAGATTCCGAAGACCGTGATGATGATACAAATACGGACGCTGACATGCATTTCAATAGCAAGGAGTGTGAAGTAGTAGCAAGAGAAACCGAAATTCATGAAGTTGCAGTTATTGAAGATGTTGTGGTGGAagacattaaaataaattcttctTATGACGTTATTGCAAATGGCGGTCTGAGTAAGGACTTGAGTTCAAATGCTCAGAAAGAGGaagaaagtcaAGTAATGCACACAAAAAAGATGTCGGGAGAAAAAAGCCTAGAATTAACACCAGATGAAACAAATATGCTGAAACACTTCAATATTGTCCAATTATCATTACATGAACAGGTAAAAGAATGGGAGAAGAGTACAGTTAGTCGTCCATTAACAAGTGACACTAAACCCCTACAATGTGAGATCTGTAACAAACCATTTGCGAATGTCAACTCTTATCGCGGTCATGTTAGACACCACGAGCCGAGTTTTGGTCAAGCGCAGTGCCTTATATGCAAGCTACGGTACAAAAGCTCTGCGTTGGTGTCTTCGCACACCAAACGTGCACACAGTAAGAAATTCTACTGCAAAATGTGTCCCAAGgcttttaataatgtaaTGGTAGCCAAAAAGCACCAGCGCTGGCATTCAGGCTACCTATACAAATGTGACTCCTGTCCGTTCTCCACTCTACACGAGTCGTCACTGGGCATTCACAAGCGACGCGCGCACGCTAACGTGCATGCGTGCGCGCTGTGCGGACGAGCGTATAATACGCGGAGAGGATTGGACGCGCATATGCATACTGCACATATTAATATTAAGGTCAAAGACATCAAAGTCAGTAAGGAGTACCGTTGTGAACAGTGCGGCATCGACTTTGCGTCGGAAGGCGCAAGACGTATTCACATAATCACATCCATTCAACATAGGAAGAAACATGATTTGTGCGACACAGCGGTCCAAGACACAAACCTACGCAACATTTGCGAGAAGTGCGGCGTAGAATGTGCTACATCCAGAGAGTTGTGTTGGCACAAGAAGTCGGAGCACCCTCGCCCTCGCAGGAAAGACCATCCGTCGCGAGGATATCCTGTAGACTGCGAACTTTGCGGCGAAGCGCTTCCGAACCGATGGAAACACTGGCACCATGTTCGAAAGCAGCATCCCGACAACACGGATACCTACAAACGGGTTCAGACCATCACTTGTATCTGTGATACTTGCGGCAAAGGCTTTCAGAACGCAACAAAGCTCCGTCTACACCAACTCCGGCACCGCAACCCCTCAGTGCGCTGCCCTTACTGCCCGCGCCTGTTCTACGACAAGTACGCACTCGCCGTGCACGCGGCCATACACGACGCGCAGCGGCCGTACCAGTGCCGCACGTGTGGGGCGGCCTTCAAGCAGCGCCGTAACTTGGACAGGCATTATACAGTTCATTCAGACATCGCTACATTTGAGTGCACGATTTGTGGAAAGAAGTTCAAATACTCGACAAGCTTGAAACTTCACGTGAACTACGTGCATAACAAGTTACCTTACCCGAAAAGGAAGAGAAGAATCAAATCAGTGAAGAACACCAGTGATTCGTAA
- Protein Sequence
- MVSYCCVNGCGNTSKNKNKNPNSAVGFHVFPANKELRSKWLRAIGRPNWSPSNHARVCSAHFTYDQINHASFKIRIKDDAVPVLSLPLNSNFEASNLEACRICLATDVKLYSLQNTHLGTCMKSIAGLSLNGMDLEDMPQYVCYQCAPSLIKCKQLIEKCITSQAILLDIFAKNGQISKDLIKEQNRSQPNLKSLENSFVLNDYLLKYDDGNNTSLFTTADSEDRDDDTNTDADMHFNSKECEVVARETEIHEVAVIEDVVVEDIKINSSYDVIANGGLSKDLSSNAQKEEESQVMHTKKMSGEKSLELTPDETNMLKHFNIVQLSLHEQVKEWEKSTVSRPLTSDTKPLQCEICNKPFANVNSYRGHVRHHEPSFGQAQCLICKLRYKSSALVSSHTKRAHSKKFYCKMCPKAFNNVMVAKKHQRWHSGYLYKCDSCPFSTLHESSLGIHKRRAHANVHACALCGRAYNTRRGLDAHMHTAHINIKVKDIKVSKEYRCEQCGIDFASEGARRIHIITSIQHRKKHDLCDTAVQDTNLRNICEKCGVECATSRELCWHKKSEHPRPRRKDHPSRGYPVDCELCGEALPNRWKHWHHVRKQHPDNTDTYKRVQTITCICDTCGKGFQNATKLRLHQLRHRNPSVRCPYCPRLFYDKYALAVHAAIHDAQRPYQCRTCGAAFKQRRNLDRHYTVHSDIATFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKRRIKSVKNTSDS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526557;
- 90% Identity
- iTF_00375290;
- 80% Identity
- iTF_00375290;