Basic Information

Insect: Apamea anceps
Gene Symbol: -
Assembly: GCA_951799955.1
Location: OX637518.1:4146669-4160358[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 0.89 11.0 6.2 2 23 356 377 355 377 0.96

2 12 0.029 2.4 9.6 0.6 2 23 385 407 385 407 0.95

3 12 0.0028 0.24 12.8 0.6 1 23 411 433 411 433 0.97

4 12 2.2 1.8e+02 3.7 1.9 1 23 438 461 438 461 0.97

5 12 0.001 0.087 14.1 0.5 1 23 465 488 465 488 0.95

6 12 0.18 15 7.1 0.4 1 22 502 523 502 531 0.94

7 12 0.0075 0.64 11.4 0.8 3 23 547 568 546 568 0.96

8 12 5.5 4.6e+02 2.4 3.3 3 23 585 606 584 606 0.95

9 12 0.00011 0.0094 17.2 2.0 2 23 622 643 621 643 0.96

10 12 0.085 7.2 8.1 0.4 3 23 650 670 648 670 0.91

11 12 0.0027 0.23 12.8 6.4 1 23 676 698 676 698 0.98

12 12 5.1e-06 0.00043 21.4 1.3 1 23 704 727 704 727 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	0.89	11.0	6.2	2	23	356	377	355	377	0.96
2	12	0.029	2.4	9.6	0.6	2	23	385	407	385	407	0.95
3	12	0.0028	0.24	12.8	0.6	1	23	411	433	411	433	0.97
4	12	2.2	1.8e+02	3.7	1.9	1	23	438	461	438	461	0.97
5	12	0.001	0.087	14.1	0.5	1	23	465	488	465	488	0.95
6	12	0.18	15	7.1	0.4	1	22	502	523	502	531	0.94
7	12	0.0075	0.64	11.4	0.8	3	23	547	568	546	568	0.96
8	12	5.5	4.6e+02	2.4	3.3	3	23	585	606	584	606	0.95
9	12	0.00011	0.0094	17.2	2.0	2	23	622	643	621	643	0.96
10	12	0.085	7.2	8.1	0.4	3	23	650	670	648	670	0.91
11	12	0.0027	0.23	12.8	6.4	1	23	676	698	676	698	0.98
12	12	5.1e-06	0.00043	21.4	1.3	1	23	704	727	704	727	0.96

Sequence Information

Coding Sequence: ATGGTGTCATATTGCTGTGTTAATGGTTGCGGTAAtaccagtaaaaataaaaagaaaaatccaGATTCAGCGGTATCGTTTCACGTGTTTCCTGCAAATAAGGAACTTAGAAGTAAATGGTTGAGAGCTATAGGACGTCCAAACTGGTCGCCTTCGAACCATGCTCGAATTTGTAGCGCACATTTCACCTACGAACAAATCAACCACGATGGCTGCAAAATAAGAATAAAGGATGATGCTGTACctgttttattattacctCTAAACTCCAATTTTGAAGCATCTAATGTGGAAGTGTGTAGGATTTGTTTGGCCACAGACGTCAAGCTGTATAGTCTACAAGATACACACCTGGGGACTTGTATGAAGTCTATTGCTGGATTAAGTCAAAATGGAATGGACTTGGAGGATATGCCACAATATGTTTGCTACCAATGTGCACCGAGCCTGATAAAATGCAACCAACTCATAGAGAAATGTATTACCTCTCAGGCAACTTTACTGGATATATTTGCTAAGAATGGACAGATATCAAAAGATCTGATAAAAGGACAAAATAGATCCCAACCGATCTTGAAGTCATTAGAGAGCAGTTTTATATTAAATGATTATTTGCTGAAACATGATGATGACAACACTCCTTGTCTATTTACTACAGGAGATTCCATAGACTATGATCATAGTTATTTAAAAAGTGAAGATGGAACAAATACTGATGCAGAGAAGCATGTCAATAACAAGGAGTGTGAAGTTGAAGCGAATGAAACTGAATTTCATGAAGTTAATGATGTGGTGGTggaagaaattaaaataaattgttctaATGATGTTATTGCAAATGGCGTTCCCAATAAGAATTTAAGTTCAAATGCTCAGAAAGAGGAGgAATTCAAAAGTCAAGTAATgcacacaaaaaatatatccGGAGAAAAAAGCCTCAAATTAACTCCAGATGAAAGAAATATGCTGAAATACTTCGACATTGTCCAATTATCATTAAATGAACAGGCAAAAGAATGGGAAAAGAGTACAGTTGGTCGTCCACTAACAAGTGACACTAAATTACACTGTGAGATCTGTAACAAATCATTCACGAGACTCGACTCTCATCGCGTTCATATTAGACACCACGAGCCGAGTTTTGGTCGAGCGCAGTGTCCTATATGCAAGCTACGGTTTAAAAGCACCGCGTTGGCGACTTCACACTCCAAACGCGCACACAGCAAGAAGTTCTACTGCAAGATGTGCCCGAAGGCTTTTAATAATGTaatggtAGCCAAAAAGCACCAGCGCTGGCATTCAGGCTACCTATACAAATGCGACTCATGTCAGTTCTCAACGTTACACGAGTCTTCACTGGGCATCCACAAGCGGCGCGCGCACGCTAACGCGCATGCGTGCGCGCTGTGCGGTCGTGCCTATAGTACACGAAGAGGATTGGACGCGCATATACATACCGCACATAGTGATATTAAGGTTATAGACATCAAAATCAGTAAGGAGTATCGTTGTGAACAGTGCAGTATCGACTTTGCGTCGGAAGGCGCAAGACGAATACACATACTTACATCCATTCAACATAGGAAGAAGCATGATTTGTGCGACTCAGCCGTCCAAAAGCCAAACCGACCCAACATTTGTGAGAAGTGCGGCGTAGAATGTTCTACGGCCCGAGAGTTGTCTTGGCACAAAAAGTCGGAGCACCCTCGCCCTCGGAGTAAAGACCATCCGCCGCGAGGATATCCTAAAGACTGCGAACTGTGCGGGGAAACGCTTCCAAACCGAAAAAAACACTGGCACCACGTTCGAAAGAAACATCCCGAGAACACGGAGAGCTACAAACGGGTTCAAACCATCACTTGTATTTGTGATATCTGCGGGAAAGGCTTTcagAACTCAACAAAGCTCCGCCTGCACCAACTCCGGCACCGCAGCCCGTCCGTGCGCTGCGCGTGCTGCGCGCGCCAGTTCTACGACTCGTACGCGCTGGCCGCGCACGCGCGCACGCACCGCGCCGAGCGCCCGCACCAGTGCCGCGCGTGCGGGGCGGCCTTCAAGCAGCGCTGCAACTTACACAGGCATTATAGAgTTCATTCAGATATCGCTACATTCGAGTGCACGATTTgtggcaaaaagtttaaatactCGACAAGCTTGAAACTTCACGTGAACTACGTGCATAACAAGTTACCTTACCCGAAAAGGAAGAAAAGAATCAAATCCGTGAAGAATACAAGTGACTCGTAA
Protein Sequence: MVSYCCVNGCGNTSKNKKKNPDSAVSFHVFPANKELRSKWLRAIGRPNWSPSNHARICSAHFTYEQINHDGCKIRIKDDAVPVLLLPLNSNFEASNVEVCRICLATDVKLYSLQDTHLGTCMKSIAGLSQNGMDLEDMPQYVCYQCAPSLIKCNQLIEKCITSQATLLDIFAKNGQISKDLIKGQNRSQPILKSLESSFILNDYLLKHDDDNTPCLFTTGDSIDYDHSYLKSEDGTNTDAEKHVNNKECEVEANETEFHEVNDVVVEEIKINCSNDVIANGVPNKNLSSNAQKEEEFKSQVMHTKNISGEKSLKLTPDERNMLKYFDIVQLSLNEQAKEWEKSTVGRPLTSDTKLHCEICNKSFTRLDSHRVHIRHHEPSFGRAQCPICKLRFKSTALATSHSKRAHSKKFYCKMCPKAFNNVMVAKKHQRWHSGYLYKCDSCQFSTLHESSLGIHKRRAHANAHACALCGRAYSTRRGLDAHIHTAHSDIKVIDIKISKEYRCEQCSIDFASEGARRIHILTSIQHRKKHDLCDSAVQKPNRPNICEKCGVECSTARELSWHKKSEHPRPRSKDHPPRGYPKDCELCGETLPNRKKHWHHVRKKHPENTESYKRVQTITCICDICGKGFQNSTKLRLHQLRHRSPSVRCACCARQFYDSYALAAHARTHRAERPHQCRACGAAFKQRCNLHRHYRVHSDIATFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKKRIKSVKNTSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526557;
90% Identity: iTF_00122464;
80% Identity: iTF_00121508;