Ostr022326.1
Basic Information
- Insect
- Oligia strigilis
- Gene Symbol
- -
- Assembly
- GCA_951800025.1
- Location
- OX637557.1:3373500-3392179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 11 7.7 3.5 2 23 294 315 293 315 0.93 2 11 0.026 2.5 9.7 0.6 2 23 323 345 323 345 0.95 3 11 0.0026 0.25 12.9 0.6 1 23 349 371 349 371 0.97 4 11 8 7.6e+02 1.9 1.2 1 23 376 399 376 399 0.95 5 11 0.0011 0.1 14.1 0.4 1 23 403 426 403 426 0.95 6 11 0.18 17 7.1 0.6 1 22 440 461 440 469 0.94 7 11 0.0054 0.52 11.9 0.8 3 23 485 506 484 506 0.96 8 11 10 9.5e+02 1.6 2.7 3 23 523 544 522 544 0.95 9 11 0.011 1 11.0 1.0 2 23 585 606 585 606 0.97 10 11 0.00029 0.028 15.9 4.8 1 23 612 634 612 634 0.98 11 11 4.7e-06 0.00044 21.5 1.3 1 23 640 663 640 663 0.96
Sequence Information
- Coding Sequence
- ATGGTGGCATATTGCTGTGTTAATGGTTGCGGTAAAACCAGTaaagataaaaagaaaaatccaAATTCAGCGGTATCGTTTCACGTGTTTCCTGCAAATAAGGAGCTTAGAAGCAAATGGCTGAGAGCTATAGGACGTCCAAACTGGTCGCCTTCGAACCATACCCGAATTTGTAGCGCGCATTTCACCTACGAACAAATCAACCACGATGGCTGCAAAATAAGAATAAAGGATGATGCTGTACCtgttttattattacctCTAAACTCCAACTTTGAAGCATCAAATGTGGAAGTTTGCAGGATTTGTTTGTCCATAGACGTCAAGCTGTACAGTCTACAAGATACACACCTGGGGACATGTATGAAGTCTATTGCTGGATTAAGTCTAAATGGAATGGACTTGGAAGATATGCCACAATACGTTTGCTATCAATGTGCACCAAGCCTGGTAAAATGCAACCAACTCATAGAGAAATGTATCACCTCTCAGGCAACTTTACTGGATATATTTGCTAAGAATGGACAGATATCAAAAGATCTGATAAAAGAACAGAATAGATCCCAACCGATCTTGAAGTCATTAGAGAATAGTTTTGTATTAAATGATCATTTGCTGAAATATGATGACGACAACACTCCTTCGCTATTTACTACAGAAGATTCCATAGAGAATGatcatattattaattttaaaagagaAGATGAAATTCAAGTTATGCACACAAAAAATATGTCTGCAGGGAGAAATCATGATTTAACGCCAGATGAAACAAATATGCTGAAATACTTCGATATTGTCCGATTATCATTACATGAACAAATTCGAGAATGGGAAAAGAGTACAGTTGGTCGTCCACTAATAAGTGACACTAACCTACAATGTGagatctgtaaaaaatcattcgcGAGTGTCAACTTTCATCGCGTTCATATTAGACATCACGAGCCGGGTTTTGGTCGAGCGCAGTGCCCTATATGCAAGCTAAGATTTAAAAGCACTGCGTTGGCGACTTCGCACTCCAAACGCGCACACAGCAAGAAATTCTACTGCAAGATGTGCCCGAAGGCTTTTAACAATGTAATGGTAGCCAAAAAGCACCAGCGCTGGCATTCAGGCTACTTATACAAATGCGATTCATGTGCCTTCTCAACGTTACACGAGTCTTCACTGGGCATCCACAAGCGGCGTGCGCACGCTAACGCGCATGCGTGCGCCCTATGCGGACGTGCCTATGGTACACGGAGAGGATTGAACGCGCATATACATACCGCACATAGTAATATTAAGGTTAAAGACATCAAAGGCAGTAAGGAGTATCGATGTGAACAATGCAGCATCGACTTTGCGTCGGAAGGCGCAAGACGAATACACATACTTACATCCAGTCAACATAGGAAGAAGCATGATCTGTGGGACAAAGCCGTCCAAGAGCCAAACCTACCCAACATTTGCGAGAAGTGCGGCGTAGAATGCTCTACGGCCAAAGAGTTGTCTTGGCACAAGAAGTCGGAGCACCCTCGCCCTCGGAGTAAAGACCATCCGCCGCCAGGATACCCTAAAGACTGCGAACTTTGCGGTGTCACGCTTCCCAACCGCAAGAAGCACTGGCACCATGTTCGAAAGCAGCATCCCGAGAACACGGAGAGCTACAAACGGGTTCAAACCATCACTTGTATTTGTGATACTGGTAACTTACTTAACTCAACAAAGCTCCGCCTCCACCAGCTCCGGCACGGCAGCCCCGCGGCGCGCTGCCCGCGCTGCCCGCGCGTGTGCTACGACACGTACGCGCTGGCTGCGCACGCGCACACGCACCGCGCCGACAGGCCGCACCAGTGTCGCACGTGTGGGGCGGCCTTCAAGCAGCGCTGTAACTTGGACAGGCATTATAGAGTTCATTCAGACATCGCTACATTCGAGTGCACGATTTGCggcaaaaagtttaaatactcGACAAGCTTGAAACTTCACGTGAACTATGTGCATAACAAGTTACCTTACCCGAAAAGGAAGAAAAGAATCAAATCCGTGAAGAATGCAAGTGATTCGtaa
- Protein Sequence
- MVAYCCVNGCGKTSKDKKKNPNSAVSFHVFPANKELRSKWLRAIGRPNWSPSNHTRICSAHFTYEQINHDGCKIRIKDDAVPVLLLPLNSNFEASNVEVCRICLSIDVKLYSLQDTHLGTCMKSIAGLSLNGMDLEDMPQYVCYQCAPSLVKCNQLIEKCITSQATLLDIFAKNGQISKDLIKEQNRSQPILKSLENSFVLNDHLLKYDDDNTPSLFTTEDSIENDHIINFKREDEIQVMHTKNMSAGRNHDLTPDETNMLKYFDIVRLSLHEQIREWEKSTVGRPLISDTNLQCEICKKSFASVNFHRVHIRHHEPGFGRAQCPICKLRFKSTALATSHSKRAHSKKFYCKMCPKAFNNVMVAKKHQRWHSGYLYKCDSCAFSTLHESSLGIHKRRAHANAHACALCGRAYGTRRGLNAHIHTAHSNIKVKDIKGSKEYRCEQCSIDFASEGARRIHILTSSQHRKKHDLWDKAVQEPNLPNICEKCGVECSTAKELSWHKKSEHPRPRSKDHPPPGYPKDCELCGVTLPNRKKHWHHVRKQHPENTESYKRVQTITCICDTGNLLNSTKLRLHQLRHGSPAARCPRCPRVCYDTYALAAHAHTHRADRPHQCRTCGAAFKQRCNLDRHYRVHSDIATFECTICGKKFKYSTSLKLHVNYVHNKLPYPKRKKRIKSVKNASDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526557;
- 90% Identity
- iTF_01094984; iTF_01093167; iTF_01094449; iTF_01093591; iTF_01094107;
- 80% Identity
- iTF_01094984;