Basic Information

Insect: Lithophane ornitopus
Gene Symbol: -
Assembly: GCA_948473465.1
Location: OX419632.1:13243631-13258539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.011 16.5 1.4 2 23 359 380 358 380 0.97

2 12 0.033 2.4 9.1 1.8 2 23 388 410 388 410 0.96

3 12 0.013 0.93 10.4 1.8 1 23 414 436 414 436 0.96

4 12 0.76 53 4.8 1.2 1 23 441 464 441 464 0.97

5 12 0.0022 0.15 12.8 0.0 3 23 470 491 468 491 0.94

6 12 0.047 3.3 8.6 0.3 1 22 505 526 505 534 0.92

7 12 0.11 7.8 7.5 0.3 3 23 550 571 548 571 0.95

8 12 4.4 3.1e+02 2.4 3.3 3 23 588 609 587 609 0.95

9 12 3e-05 0.0021 18.7 1.0 1 23 624 646 624 646 0.98

10 12 0.016 1.1 10.1 0.1 2 20 652 670 651 673 0.91

11 12 0.00026 0.018 15.7 4.8 1 23 679 701 679 701 0.98

12 12 4.7e-05 0.0033 18.1 1.8 1 23 707 730 707 730 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.011	16.5	1.4	2	23	359	380	358	380	0.97
2	12	0.033	2.4	9.1	1.8	2	23	388	410	388	410	0.96
3	12	0.013	0.93	10.4	1.8	1	23	414	436	414	436	0.96
4	12	0.76	53	4.8	1.2	1	23	441	464	441	464	0.97
5	12	0.0022	0.15	12.8	0.0	3	23	470	491	468	491	0.94
6	12	0.047	3.3	8.6	0.3	1	22	505	526	505	534	0.92
7	12	0.11	7.8	7.5	0.3	3	23	550	571	548	571	0.95
8	12	4.4	3.1e+02	2.4	3.3	3	23	588	609	587	609	0.95
9	12	3e-05	0.0021	18.7	1.0	1	23	624	646	624	646	0.98
10	12	0.016	1.1	10.1	0.1	2	20	652	670	651	673	0.91
11	12	0.00026	0.018	15.7	4.8	1	23	679	701	679	701	0.98
12	12	4.7e-05	0.0033	18.1	1.8	1	23	707	730	707	730	0.96

Sequence Information

Coding Sequence: ATGGTATCGTATTGCTGTGTTAATGGTTGCGGTAACACCAGTAAAAATAAAAACAAAAATCCTAACTCAGCGGTATCGTTTCACGTGTTTCCTGCAAATAAGGAGCTTCGAAGTAAATGGTTGAGAGCTATAGGACGTGCAAACTGGTCGCCCTCGAATCATGCTCGAATATGTAGCGCGCATTTCGTCTACGATCAGATCAACCACGATAGCTGCAAAATAAGAATAAAGGATGATGCCGTTCCTGTTTTATTATTACCTCTAAACTCCAACTTTGAGGCATCTGATGTGGAAGCTTGCAGGATATGTTTGGTCACAGACGTCAAGCTGTACAGTCTACATGATACTCACCTGGGGACATGTATGAAGTCTATTGCTGGATTAAGTCTAAATGGAATGGACTTGGAAGACATGCCACAATATGTTTGCTTCCTATGTGCACCAAGCCTGATAAAAAGCAACCAACTGATTGAGAAATGCATGACCTCTCAGGCAACTTTACTGGATATATTTGCGAAGAATGGACAGATATCAAAAGATCTGATAAAAGGCCAAAATAGATCCCAGCCGATCTTGAAGTCATTAGAGAACAGTTTTGTATTAAAAGATTATTTGCTCAAATATGATGATGGTAACAATACTTCGCTATATGCAACAACAGATTTCCATTCCATAGATAAAGAGGACAATAATTTCAAAAGTGAAGATGATACACATTTTAATGCTAACACTCATCTCAATAACAAGGAATGTCTAGTTGAAGCGAATGAAACCGAATTCTCTGAAGTAAATGAGGATGTGGTGGGCGATGAAATTAAAATTGATTCTTCTGATGATGTTATTACAAATGGCGATCTCAGTAAGGATTTGAGTTCAAATACACAGGAAGAATATGAAAATCAAGTAATTCTTTCAAAAACACAAGCACAGTGTGAAGAAAAAACCATTGAATTAACTCCAGATGAAACAAATATGGTGAAATACTACGATATTGTCCAATTATCATTACATGAACAGGTAAAGGAATGGGAAAAGAGTACAGTTAGTTGTCCACTAACAAGTGACACTAATCTGCAATGTGAAATCTGTAACAAATCATTTGCGAATGTCAACTCTTATCGCGATCATGTTAGACACCATGAGCCGAGTTTTGGTCAAGCGCAGTGCCATATATGTAAGCTACGGTTTAAAAGCACTGCGTTGGCAACGTCTCACGCCAAACGCGCACACAGCAAGAAATTCTACTGCAAAATGTGCCCTAAGGCTTTTAATAATGTAATGGTAGCCAAAAAGCACCATCGCTGGCATTCAGGATACTTGTACAAATGTGACTCGTGTCCGTTCTCAACGCTACACGAGTCGTCACTGGGCATTCATAAGCGACGCGCGCACGCTGCCGCGCTTGCGTGCGCGCTGTGCGGACGAGCGTATAGTACACGGAGAGGATTGGATGCCCATATACTTATTGCACATAGTTGTATTAAGGTTAAAGACATCAAAGTCAGTAAGGAGTATCGTTGTGAACAGTGCGGTATCGACTTCGCGTCCGAAGGCGCAAGACGAATTCACGTACTGACATCCATTCAACATAGGAAGAAACATGATTTATGCGACACAGTGATCCAAAACCCAAATCTACGCATTATTTGCGAGAAGTGTGGAGTAGAATGTGCTACGGGCAGAGAGTTGTCTTGGCACAAGAAGTCAGAGCACCCTCGCCCTCGGAGTAAAGACCATCCGTCGCGAGGATATCCTAACGACTGCGAACTTTGCGGCGAAACGCTTCCAAACCGCAAGAAACATTGGCACCATGTTCGAAAAAAACATCCCGAGAACACAGATACCTACAAAAGGGTTCAAACCATCACTTATATTTGTGATACTTGCGGGAAAGGCTTTCAGAACTCGACAAAACTCCGCCTACACCAGCTCCGCCACCGCAGCCCCTCAGTGCGCTGCCCTCGCTGCCCGCGCCTGTTCTACGACAAGTACGCGCTGGCCGCGCACGCGCCCACCCACGGCGCCGACAGGCCGCACCAGTGCCGCACGTGTGGGGCGGCCTTCAAGCAGCGCTGTAACTTAGACAGGCATTATAGAGTTCATTCAAACATTGCTACATTCGAGTGCACGATTTGCAGCAAAAAGTTCAAATACTCGACAAGCTTGAAACTTCACGTGAACTACGTGCATAACAAGTTACCTTACCCGAAAAGGAAGAAAAGAATCAAATCCGTGAAGAATGCGAGTGATTCCTAA
Protein Sequence: MVSYCCVNGCGNTSKNKNKNPNSAVSFHVFPANKELRSKWLRAIGRANWSPSNHARICSAHFVYDQINHDSCKIRIKDDAVPVLLLPLNSNFEASDVEACRICLVTDVKLYSLHDTHLGTCMKSIAGLSLNGMDLEDMPQYVCFLCAPSLIKSNQLIEKCMTSQATLLDIFAKNGQISKDLIKGQNRSQPILKSLENSFVLKDYLLKYDDGNNTSLYATTDFHSIDKEDNNFKSEDDTHFNANTHLNNKECLVEANETEFSEVNEDVVGDEIKIDSSDDVITNGDLSKDLSSNTQEEYENQVILSKTQAQCEEKTIELTPDETNMVKYYDIVQLSLHEQVKEWEKSTVSCPLTSDTNLQCEICNKSFANVNSYRDHVRHHEPSFGQAQCHICKLRFKSTALATSHAKRAHSKKFYCKMCPKAFNNVMVAKKHHRWHSGYLYKCDSCPFSTLHESSLGIHKRRAHAAALACALCGRAYSTRRGLDAHILIAHSCIKVKDIKVSKEYRCEQCGIDFASEGARRIHVLTSIQHRKKHDLCDTVIQNPNLRIICEKCGVECATGRELSWHKKSEHPRPRSKDHPSRGYPNDCELCGETLPNRKKHWHHVRKKHPENTDTYKRVQTITYICDTCGKGFQNSTKLRLHQLRHRSPSVRCPRCPRLFYDKYALAAHAPTHGADRPHQCRTCGAAFKQRCNLDRHYRVHSNIATFECTICSKKFKYSTSLKLHVNYVHNKLPYPKRKKRIKSVKNASDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526557;
90% Identity: iTF_00907110; iTF_00906550; iTF_00906221; iTF_00908286; iTF_00907953;
80% Identity: iTF_00907110;