Basic Information

Insect: Vanessa atalanta
Gene Symbol: lrrfip2
Assembly: GCA_905147765.1
Location: LR990555.1:12444998-12459477[+]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.32 1.4e+03 -1.4 0.5 222 281 55 115 15 119 0.56

2 3 1.5e-74 6.6e-71 239.4 23.0 1 259 129 381 129 412 0.88

3 3 5 2.2e+04 -7.4 14.7 1 44 409 452 409 482 0.58

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.32	1.4e+03	-1.4	0.5	222	281	55	115	15	119	0.56
2	3	1.5e-74	6.6e-71	239.4	23.0	1	259	129	381	129	412	0.88
3	3	5	2.2e+04	-7.4	14.7	1	44	409	452	409	482	0.58

Sequence Information

Coding Sequence: ATGGGTGAGCGGTCTGACCAAGCAATATCAGAGAACAGCGACGAGGAGAGTGGTGAGGCCTTCACTGATGGAGATTTTGAAGATTCAGATGATGAGACGGTTATTGAACGTAGTGCGTCTAGTAAAACGTCACATATCCCCCTCAATGAAACCGTGAATTCCGATATCAAAATTAACAACACGATCGATGAAACAGATGACATTTTAGAGGAACACATTAATGGTCATAAAGAGAAGCTGAACGGCTCTGACGACGATGATATTAAAAATGTAAATACAAGTAGCCACAGCAACGGTGATAATTCATTAGAAGATTTGCATACAGATTCGCAGAGCGATAGCAATGGATCTATCGTTGGAATCCTCGGAGATCAACAAAGTCACGCGGAACAACGGCTGGCAGCACGACGCGCGGCGCGGGCGGAGGCGCGAGAGATACGTATGAGGGAGCTGGAGCGACAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGATATGTACGCAGAGACAGTGGGTCGGCGGACGGGCAGTCGGCTAGCGGCCATGAGTCCGAGCGTGCTGCACTCGCCGAGACGAAGTTCGGAGGACTCGGACGATGTGCTCAGCATCAAGGACCTCAGGCATGAGCTAAAGGAAGTCGAGGAAAAGTTTCGCAAAGCGATGATCTTAAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAACTCCAGCGCGAACACAAAGAGAAGTGCTCGAGTCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGGGACGCGGCGGCGGCGGCGGCGGGGCGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCGCTCGCCGGCGAGCCGTGCGGCAGCGTGCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGTGGCGCACCCCGAGCGCGACGTGGACTGCGAGCTGGAGGCGCTGCGCAAGGCGGCGTCCGAGGCCAAGGCCCGCGCCGCGCGCGCCGAGGCCGAGGCGGCGCTGCACGCGGCCGCCGTCGTGCGCCTCGAGGCGCAGGTCGCCCGTCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCGAGGGAAGCATTAAACCGAGTCGAGGAGTTGGAAACGGAGAACAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCGAAGTCCGCCCTGCTGAAGGACCTGTGA
Protein Sequence: MGERSDQAISENSDEESGEAFTDGDFEDSDDETVIERSASSKTSHIPLNETVNSDIKINNTIDETDDILEEHINGHKEKLNGSDDDDIKNVNTSSHSNGDNSLEDLHTDSQSDSNGSIVGILGDQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGEPCGSVPPLALVSHHSQQLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNDERAARQNGVAHPERDVDCELEALRKAASEAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079074; iTF_01507234; iTF_01508081; iTF_00695619; iTF_01079912; iTF_00985120;
90% Identity: iTF_01079912;
80% Identity: -