Mcix030908.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220565.1
- Location
- HG992214.1:16843963-16865668[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-74 8e-70 236.3 21.0 1 261 129 383 129 400 0.91 2 2 1 3.1e+04 -7.9 16.2 1 44 407 450 407 482 0.63
Sequence Information
- Coding Sequence
- ATGGGCGAGAGATCAGATCAAGCCATTACGGAGAATAGTGACGAGGAGAGTGGCGATGCATTTACTGATGGAGATTTCGAAGATTCAGATGATGAAACTGTCATCGAACGGAGGGCGTCTAGCAATACTGCACACATCCCTCTCAACGAAACGGTTAATGCTGATATTACAATTGACAATACAATTGACGAAACAGATGAAAGCGGAGAAAAACAAATTAATGGTCACACAGAGATACTGAGCAGTACATACGATGAAGATGGGATCAATTTAAACAGGAGCAGCGCGAGTAACGGCAATAACTCGCTGGAAGACTTGCGCAGGGATTCTATGAGCGATTCCAATGGATCGATCGTTGGGATTCTCGGAGATCAACAAAGTCACGCGGAACAGCGGCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCGTACGACATGTACGCGGAGACAGTGGGCCGGCGAGCGGGTAGTCGGCTGGCGGCGATGAGTCCCGGCGCGCTTCATTCGCCGCGCCGGAGCTCCGAGGACTCCGATGACGTGCTCAGTATCAAGGACCTTAGGCACGAGCTGAAGGAGACCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGATAACGACAAGGCGGCGCTCGCCTACCAGCTGGAGCTGCTCAAGGACCGCATCGAGGAGCTGCACGAGGAGTACTCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGCTCGAGCCACGAGCGGCTGCGGCGCGAGCACGCGGCGCTGGAGCGCGACGTGCGCGCGGCGCGGGACGCCGTGCGCGCGCGCGACGCGGCGGCGGAGGCGGCGGGCCGCGCCTTCGTGGATGCCGCCGCCGCGCCCGCCGCGCCCGCCGGCCCGCCCTGCGGCGCCGTGCCGCCGCTGGCGCTCGTGTCGCACGCCTCGCGCCGCCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGACTGGAGCGGCTCGCGAGCGCCAAGGCGTCCCTGGAGAGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCGGCGCGGCAGAACGGCGCGGCGCCCGAGCGCGACGAGGGCGAGCTGGAGGCGCTGCGGCGCGCCGCGGCCGAGGGCAAGGCGCGGGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCACGCGGCCGCCGTGGCGCGTCTGGAGGCGCAGCTGGCGCGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCGCGAGAGGCACTAAATCGAGTAGAAGAACTAGAAACGGAAAACAGTCACCTCACGAAACGGCTCGACAAACTCAAAAATGCTAAATCTGCGCTATTAAAGGACCTGTGA
- Protein Sequence
- MGERSDQAITENSDEESGDAFTDGDFEDSDDETVIERRASSNTAHIPLNETVNADITIDNTIDETDESGEKQINGHTEILSSTYDEDGINLNRSSASNGNNSLEDLRRDSMSDSNGSIVGILGDQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGSRLAAMSPGALHSPRRSSEDSDDVLSIKDLRHELKETEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELHEEYSQLQREHREKCSSHERLRREHAALERDVRAARDAVRARDAAAEAAGRAFVDAAAAPAAPAGPPCGAVPPLALVSHASRRLLDDAGEGTLDVRLERLASAKASLESEVRKLKLQLNEERAARQNGAAPERDEGELEALRRAAAEGKARAARAEAEAALHAAAVARLEAQLARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_00695619;
- 80% Identity
- -