Nio007921.1
Basic Information
- Insect
- Nymphalis io
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147045.1
- Location
- LR989903.1:12768149-12783427[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 3.1e+03 -2.4 0.4 234 249 68 83 22 118 0.50 2 3 4.3e-75 1.1e-70 238.8 22.5 1 259 129 381 129 412 0.86 3 3 1 2.6e+04 -7.0 14.5 1 44 409 452 409 486 0.55
Sequence Information
- Coding Sequence
- ATGGGTGAGCGGTCTGACCTAGCAACTTCAGAGAACAGCGACGAGGAGAGCGGTGAGGCCTTCACTGATGGTGATTTTGAAGATTCGGATGATGAGACGGTCATCGAACGTAGTGCGACCAGTAAAACGTCAAATATCCCTCTCAATGAAACTGTGAATTCTGATATTAAAATTGACAGTATGATTGATGAAATAGATGACAGTTTAGAGGAACACATCAACGGTCACAAGGAGAAGCTTAACAGTTCTGACGGTGATGATGATAAAGATATAAAAATAAGCAATCATAGCAACGGTGATAATTCATTAGAAGATTTGCAAGTAGATTCGCAGAGCGATAGCAATGGGTCTATCGTTGGAATACTCGGAGATCAACAATGTCACGCGGAACAACGGCTGGCTGCTCGACGAGCGGCGCGGGCGGAGGCGCGAGAGATACGGATGAGGGAGCTCGAGCGACAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTACGCAGAGACAGTGGGCCGGCGGACGGGCGGCCGGCTAGCGGCCATGAGTCCGAGCGTGCTGCACTCGCCGCGGCGGAGCTCGGAGGACTCGGACGATGTGCTCAGTATCAAAGACCTCAGGCATGAGTTGAAGGAAGTTGAAGAAAAGTTTCGCAAGGCTATGATCTTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTACTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAGCTACAGCGCGAACACAAAGAGAAGTGCTCGAGCCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGGGACGCGGCCGCGGCGGCGGCGGGACGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCACTCGCCGGCGAGCCCTGCGGCAGCGTCCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGACAGAACGGCGTGGCGCACCCCGAGCGCGACGTGGACTGCGAGCTGGAGGCGCTGCGCAAGGCGGCGTCCGACGCCAAGGCCCGCGCCGCGCGCGCCGAGGCCGAGGCGGCGCTGCACGCGGCCGCCGTCGTGCGCCTCGAGGCGCAGGTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCGCGGGAAGCATTAAACCGAGTTGAGGAATTGGAAACGGAGAACAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCAAAGTCCGCCCTGCTGAAGGACCTGTGA
- Protein Sequence
- MGERSDLATSENSDEESGEAFTDGDFEDSDDETVIERSATSKTSNIPLNETVNSDIKIDSMIDEIDDSLEEHINGHKEKLNSSDGDDDKDIKISNHSNGDNSLEDLQVDSQSDSNGSIVGILGDQQCHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGGRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGEPCGSVPPLALVSHHSQQLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNDERAARQNGVAHPERDVDCELEALRKAASDAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_01079912;
- 80% Identity
- -