Vcar024027.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220365.1
- Location
- LR999935.1:1408519-1426069[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 9.6e+02 -0.6 0.1 222 282 55 115 20 119 0.66 2 3 4.7e-75 4.1e-71 240.2 23.4 1 259 128 380 128 411 0.89 3 3 3 2.6e+04 -7.3 14.7 1 44 408 451 408 483 0.56
Sequence Information
- Coding Sequence
- ATGGGTGAGCGGTCTGACCAAGCGATATCAGAGAACAGCGACGAGGAGAGCGGTGAGGCCTTCACCGATGGAGATTTTGAAGATTCAGGTGATGAGACGGTTATTGAACGCAGTGCGTCCAGTAAAACGTCACACATCCCCCTCAATGAAACTGTGAATTCCGATATAAATATTAACAACACGATTGATGAAACAGATGACATTTTAGAGGAACACATTAACGGACATACGGAGCTGAACGGCTCTGACGACGATGATGTTAAAAATGTAAAATCAAGCAGTCACAGCAACGGTGATAATTCATTAGAAGATTTGCATGTAGATTCGCAGAGCGATAGCAATGGTTCTATCGTTGGAATCCTCGGAGATCAACAAAGTCACGCGGAGCAACGGCTGGCGGCGCGAAGAGCGGCGCGGGCGGAGGCGCGAGAGATACGTATGAGGGAGCTCGAGCGACAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCCTACGATATGTACGCAGAGACAGTGGGTCGGCGGACGGGCAGCCGGCTGGCGGCCATGAGCCCGAGCGTGCTGCACTCGCCGCGGCGCAGCTCGGAGGACTCGGACGACGTGCTCAGCATCAAGGACCTCAGGCATGAGCTGAAGGAAGTCGAGGAGAAGTTTCGCAAAGCGATGATCCTAAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAGCTGCAGCGCGAACACAAGGAGAAGTGCTCGAGCCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGCGACGCGGCGGCGGCGGCGGCCGGCCGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCGCTCGCCGGCCAGCCCTGCGGCAGCGTGCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCGGCGCGGCAGAACGGCGTGGCGCACCCCGAGCGCGACGTGGACTGCGAGCTGGAGGCGCTGCGCAAGGCCGCGTCCGAGGCCAAGGCCCGCGCCGCGCGCGCCGAGGCCGAGGCCGCGCTGCACGCCGCCGCCGTCGTGCGCCTCGAGGCGCAGGTGGCGCGACTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGCGAGGCGAGGGAAGCATTAAACCGAGTTGAGGAGTTGGAAACCGAAAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCCGCCCTGCTGAAGGACCTGTGA
- Protein Sequence
- MGERSDQAISENSDEESGEAFTDGDFEDSGDETVIERSASSKTSHIPLNETVNSDININNTIDETDDILEEHINGHTELNGSDDDDVKNVKSSSHSNGDNSLEDLHVDSQSDSNGSIVGILGDQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGQPCGSVPPLALVSHHSQQLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNEERAARQNGVAHPERDVDCELEALRKAASEAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_01079912;
- 80% Identity
- -