Eedi011889.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000009.1:2557917-2584963[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-75 2.4e-70 238.6 22.7 1 264 129 386 129 404 0.91 2 2 1 4.7e+04 -7.8 16.4 1 44 407 450 407 481 0.64
Sequence Information
- Coding Sequence
- ATGGGAGAGAGATCGGATCAAGCCATTTCAGAGAACAGTGACGAGGAGAGCGGTGATGCTTTTACTGATGGAGATTTTGAAGATTCAGATGACGAGACTGTCATTGAACGGAGGGCATCTAGCAAAACTTCACACATCCCTCTTAATGAAACCGTGAATGCTGATATAAAAATTGATAGTACAATTGACGAAACAGATGATATTCCAGAGAATCAAATGAATGGTCGCAAAGACAAATTGAGCAGCACAGACGATGAAGATGCAATCAATTTGAACAGGAGCAGCGCAAGTAACGGCGATAATTCATTGGAAGACTTGCATAGAGATTCTCTGAGCGATTCCAATGGATCGATCGTTGGGATTCTTGGAGATCAACAAAATCacGCGGAACAGCGtctggcggcgcggcgcgcggcgcgggcgGAGGCGCGCGAGATCCGCATGCGGGAGCTCGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTACGCAGAGACAGTGGGCCGGCGGGCAGGCAGTCGGCTAGCGGCGATGAGTCCCGGCGCGCTGCACTCGCCGCGCCGGAGCTCGGAGGATTCCGACGACGTGCTCAGCATCAAGGACCTAAGGCACGAGCTGAAGGAGACAGAGGAGAAGTTCCGCAAGGCGATGATCCTTAACGCGCAACTCGACAACGACAAAGCGGCGCTCGCCTACCAACTGGAGCTGCTCAAGGATCGCATCGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAGCACAGGGAGAAGTGCTCGAGCCACGAGCGGCTGAAACGCGAGCACGCGGCGCTGGAGCGCGAGGTGCTGGCGGCGCGCGACGCCGTGCGCGCGCGCgacgcggcggcggcggcggccggACGCGccttcgtggaggcggccgccgcgcccgccgcgcccgccggcgAGCCCTGCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCACGCCTCGCAGCGCCTGCTCGACGACGCCGGCGAGGGCTCGCTCGACGTGCGACTGGAGCGGCTGGCGGGCGCGAAGGCGTCGCTAGAGAGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCGGCGCGGCAGAACGGCGTGGCGCACGAGCGCGACGACGGCGAGCTGGAGGCGctgcggcgcgcggcgggcgacGCCaaggcgcgggcggcgcgcgcggagGCGGAGGCGGCGCTGCACGCGGCCGCCGTGGCGCGCCTCGAGGCGCAGGTGGCGCGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGAGAGgcGAGAGAGGCACTAAATCGAGTCGAAGAATTAGAAACAGAGAACAGTCACCTCACGAAGCGGCTCGACAAACTCAAGAATGCTAAGTCCGCGCTATTAAAGGACCTGTGA
- Protein Sequence
- MGERSDQAISENSDEESGDAFTDGDFEDSDDETVIERRASSKTSHIPLNETVNADIKIDSTIDETDDIPENQMNGRKDKLSSTDDEDAINLNRSSASNGDNSLEDLHRDSLSDSNGSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGSRLAAMSPGALHSPRRSSEDSDDVLSIKDLRHELKETEEKFRKAMILNAQLDNDKAALAYQLELLKDRIEELHEEYAQLQREHREKCSSHERLKREHAALEREVLAARDAVRARDAAAAAAGRAFVEAAAAPAAPAGEPCGAVPPLALVSHASQRLLDDAGEGSLDVRLERLAGAKASLESEVRKLKLQLNEERAARQNGVAHERDDGELEALRRAAGDAKARAARAEAEAALHAAAVARLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_00985120;
- 80% Identity
- -