Npol019263.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220585.1
- Location
- HG992247.1:1444648-1459020[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.029 7.4e+02 -0.3 0.7 221 284 54 117 10 120 0.69 2 3 3.8e-75 9.7e-71 239.0 21.5 1 264 128 385 128 411 0.88 3 3 1 2.6e+04 -7.5 14.9 1 44 408 451 408 483 0.56
Sequence Information
- Coding Sequence
- ATGGGTGAGCGGTCTGACCGAGCAACATCAGAGAACAGCGACGAGGAGAGCGGTGAGGCCTTCACTGATGGTGATTTTGAAGATTCAGATGATGAGACGGTCATCGAACGTAGTGCTTCCAGTAAAACGGCAAATATCCCTCTCAATGAAAGTGTGAATTGTGATATTAAAATTGACAGTACGATTGATGAAACAGATGACAGTTTAGAGGAACACATCAACGGTCACAAGGAGAAGCTTAACAGCCCTGACGGTGATGATAAAAATGTAAAAATAAGCAATCAGAGCAACGGTCATAATTCGTTAGAAGATTTGCAAATAGATGCGCAGAACGATAGCAATGGGTCTATCGTTGGAATACTCGGAGATCAACAAAGTCACGCGGAACAACGGCTGGCTGCTCGACGAGCGGCGCGGGCGGAGGCGCGAGAGATACGGATGAGGGAGCTGGAGCGACAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTACGCAGAGACAGTGGGCCGGCGGACGGGCGGCCGGCTGGCGGCCATGAGCCCGAGCGTGCTGCACTCGCCGCGCCGGAGCTCGGAGGACTCGGACGACGTGCTCAGTATCAAGGACCTCAGGCATGAGTTGAAGGAAGTCGAGGAAAAGTTTCGCAAGGCGATGATCCTAAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCACAGTTACAGCGCGAACACAAAGAGAAGTGCTCGAGCCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGGGACGCGGCCGCGGCGGCGGCGGGACGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCGCTCGCCGGCGAGCCCTGCGGCAGCGTCCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCGGCTGCTCGACGACGCCGGCGAGGGCCCGCTCGACGTGCGGCTCGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGCGGCGCACGGCGAGCGCGACGTGGAGTGCGAGCTGGACGCGCTGCGGCGCGCGGCGGCCGACGCCAAGGCCCGCGCCGCGCGCGCCGAGGCCGAGGCGGCGCTGCACGCGGCCGCCGTCGTGCGCCTCGAGGCGCAGGTGGCGCGACTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGCGAGGCGCGGGAAGCATTAAACCGAGTTGAGGAATTGGAAACGGAGAACAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCGAAGTCCGCCCTGCTGAAGGACCTGTGA
- Protein Sequence
- MGERSDRATSENSDEESGEAFTDGDFEDSDDETVIERSASSKTANIPLNESVNCDIKIDSTIDETDDSLEEHINGHKEKLNSPDGDDKNVKISNQSNGHNSLEDLQIDAQNDSNGSIVGILGDQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGGRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGEPCGSVPPLALVSHHSQRLLDDAGEGPLDVRLERLAGAKAALEGEVRKLKLQLNDERAARQNGAAHGERDVECELDALRRAAADAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_01507234; iTF_01506357; iTF_01079074;
- 80% Identity
- -