Ttab011951.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus tabidus
Gene Symbol
-
Assembly
GCA_030142655.1
Location
JARQTI010000726.1:220835-224299[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00014 0.012 16.4 1.5 1 23 115 138 115 138 0.96
2 13 0.012 1 10.3 4.6 2 23 253 275 253 275 0.91
3 13 0.00095 0.082 13.8 1.7 2 23 332 354 332 354 0.95
4 13 6.8 5.9e+02 1.7 7.6 3 23 439 460 438 460 0.95
5 13 6.4 5.5e+02 1.8 2.9 1 23 510 533 510 533 0.94
6 13 0.00092 0.079 13.8 0.1 3 23 582 603 581 603 0.95
7 13 0.02 1.7 9.7 0.6 3 23 630 651 628 651 0.93
8 13 0.0089 0.77 10.7 3.6 2 23 697 719 696 719 0.96
9 13 0.12 10 7.2 4.2 3 23 734 755 732 755 0.92
10 13 0.00023 0.019 15.8 0.2 2 23 800 822 800 822 0.93
11 13 0.056 4.8 8.2 1.6 1 23 907 929 907 929 0.98
12 13 0.00015 0.013 16.3 0.7 2 23 945 967 944 967 0.96
13 13 0.0052 0.45 11.5 0.4 1 23 1036 1059 1036 1059 0.98

Sequence Information

Coding Sequence
ATGACGTCCACACTATCGCGCGGTGCGATCCTGCCTGATCCTGGCGAGCTGGACAGCGACGGTTCTAGTGGAGAAGAGCGAGACGCCAGGAAGCGTCTCCACGGTGACCTGGACAGCACCGGTCCGAAGAAGCGACGGAAACAGACGACCCCGGTGAGGTTCCCGGCGTCGCTGATGACTGGTGAACGAGCGGAGTCTGAggacgacggcgacgacgacgaagcGGAAGTCGACGAGGACGTCGAGGCTGAGCGGGAAGGTAAGCAGCAGCGTCGTTCTCCCCAGGACTCGGTCACCGGTGATCATCGAGTAACGAGCAAGGACGAGAACCTGAATAACGAATTCCGCTGCCAATATTGTAgtcaatttttcgataacAAGGAAACTTTGAATCAGCATATAGATAGCGAGCACTATGTACAGTCGCGAGACCAAGTGCAGGTCAAATTAGAGCCGAGCCAGGAGCAGTCCGAGAGTCCTGTCAATCTGTCGGGACTCAGTATAAAGAGTTTCGCGGCATCTTGGTTGTCGGGCCAAGTCCAAGGTCAGCCACCGGGTCAGGTACAGAGCGAAGACTGGACGGTCGGTAATACAGTGACACCCGTGAGCACGATACCAAATCATCTACAAAGTCTACCGTTTCCTGGTGCCCTGGCCCAGTATCTTCCTCTACCTGGTTTCCCGCTGCCAGACTCGAGTCAGATACCAAGAGCACCCATAGGTCCGGCCCCGGTCCGAATATTCAACCCGGACGCCTACTGCGACCTCTGCAACAAGGAGTTCTGCAACAAGTACTTCCTGAAGACACACAAAGCGAACAAGCACGGCATCTACGTGGATTCGCCAGGTCAGCCAGCCACAGAATCCAATCTTGGTCCACCGGTTTACGGTAGCACGTTCACTCCTGGTAACATCAAGATGGAACAGATTCAGAGGTTAGACGTTGCAGCGGtaccaccgccgccgccgccgtgCATACCGACGCCCAGCGCCTCCTGCGACGTCTGTCAGAAGAGGTTCAAGAACGAAGAGTCCGTGAGGAAGCACAAGCAAAAGGTTCATTCGGAGAACAGCGAGCCTGGTGAGAATCAGCCGATGCAATCTTTGGACGATGACCGGGACCAGAGTTATCACAGTCTAAGTCCAGGAGCTATGGAAGCACTTTTCAAGCAGGAGTTCGGCGTGGAGCAGGAGGACACGAGCTTCATGCCGGCACCTAGACACCTGTCGCCCCAGTCGATTCAGCAAGCTAGGGATTCGGGTTTCAACGCAGATCGTCTACGTAGACTGGGTGTTATAAATCCTGACGCCTTCTGCGAGATCTGCTGCAAGGAATATTGTAACAAGTACTTCCTGAGGACGCACAAGATGAAGCGCCACGGTATCTACATCCAGGACAGCGAGAAGTCACCCAGCAACCCTGGAGCAGCCGCCAGCTGGCACCAGGTGCAAACCAGTCCGCTCAACCTGATCGTGACCGAGACGACCGGGAACAGTTCAGAGTCCAGTGATCGACCTGGTGAGGAGCACGAGTGCAAGCCCTGCGGACTGAGATTTCAGACCAATGGATTGCATCAGGCGCATAGACAGAAGATGCACGAGATAGAAGAGCAAAGGTCACCCAAGCAGGATTACGAGGTCGAGATCACGGATCAACGACCTGACTCCATTTCCGAAGATCTTCAGAAGCTCCAGACAATGATCCTGCAACTAAACGGGTTGGAATCTAGTCGCGGTGCACCCTGTGCAGTCTGTGGAAGAGAATTTGAAACCCGATTGGCCCTCAGGACTCACATGACCAGCGATCACGGCGCCATCATCGAGGAGCCGACGTCACCGTGTCCGGTGACAGAGAAGTCCCCGACACCTATTGGCGGTACCGTGAACTGCACCGTCTGCGACAAGGAATATCTCAATCACGATCTATTGAGGAAGCACATCAGCGAGGAACATCAGAATCAGAATTGTACACCGGCGACGACACCGCTTCCCCAGGCGGTGCCGATTCCTGTAACTACTACTCCGACGTCGGCACCGGTGGCGCAGACCGAGCGCAAGGCGTCGGTGTCCATGACGCCAACGTCCAGCTACTGTGAGATATGCAATAAGGAGTTGTGCAACAAGTACTTCATGAAGACTCACATGCAGAGGATGCACggtattgaaattgaaaatggagcCCAGATCGGTGGTGTTATATGCAATATATGTAACAAGGAACTGTGCAGCAAGTACTTCCTCAGGGTTCACAAGCACAACACGCACGGTATCGTCGAAGAGGGCACTTCCGGTTCGACGAAGCAAGAATCTTACGAGTCCTCGAATAGCGAAGACTCGGCCTTGAAACCCGAACAGTTAGGTGACCTGAGTCACAGATACTTCACCCACTTCACCGAAGTGTGTCCGATATGCAGCAGAAGATTTAGGAGTACGAAATGGCTGAAGGCTCATCTGCTGGGAGATCACGGCAAGGCAGGGGTGGACAAGTGGCGTGAATTGGAACAACAGTACCAATCGGCACCACGAGGTgggagcagcagcagcagtaacAATAGATCGGCAGGACCTTCGAGGTCTGCGCATCAGAATTCTAGCCTAAAAATACCAAACGGCCTGGAACTGGGTCAGCACGTTAAACCTACCGATTACACTGGTCTTGGCAATCAGGTACTGTCCAACTTATTTGGTACCGGTTCCGACGATCAGCAACTCAAGAGCTACAGGTGTTCCTACTGCAACTTCACGACGACGGTGCTGCCATTTTTGTTCCTTCACGAAAGGTCTCACGTGAGTCCTCAGGGCGGAACTGGCCTGGACAACGACAGGGGACTCCAATGTCCAATTTGCTCCCAGGGATTTCCACAGCCTGAACTCTTGCACCATCATCTCCTGACTCAACATCAGTTTCCTGGACTGCTCACGCAATTCCAACCGCCGACGCTGAACAACATCAGGCCTGAGATAAGCGTCGATAAGCATCAAGTTGAAACGAAGGATCAGGATCAGAAGGAGGAGCGTCGGCAGAGTAGTCCTCAGACGTCATCAAGTTTGGacgttaaacaaaaaagtgaGGAACCCGCGGTCCAGGTGACACCTCAGGGCGCCTATAAGTGCGCCCAGTGTGGCTACGCCACTGCCAATCTCAATAGGATCAAGAAGCACATCAGGAAGGATCACAAGACCCTCGGCGATCCTACTGATAGCGTGATAACGGAACTGAGCAAGACTCTCAAAGACGTCGCCAACAAGCACAAGGTCCCAGCCAGCTACGCGACGCCGCAGGACATGAATTCGAATCCCGACAAGACGATAATGCAGCCGTTCCTTATAGAGGAGTGCGACCTCACGACGCCCGGCGAAGAATCAAGCTCGGAGAGACGCTTCGCGCCGGCCCTCATTTATTTGCCTGTTAAATCGCGCATAAACGGCCCCTTGACTGCGTCCTTTACACTGAGTCCCGCCTGA
Protein Sequence
MTSTLSRGAILPDPGELDSDGSSGEERDARKRLHGDLDSTGPKKRRKQTTPVRFPASLMTGERAESEDDGDDDEAEVDEDVEAEREGKQQRRSPQDSVTGDHRVTSKDENLNNEFRCQYCSQFFDNKETLNQHIDSEHYVQSRDQVQVKLEPSQEQSESPVNLSGLSIKSFAASWLSGQVQGQPPGQVQSEDWTVGNTVTPVSTIPNHLQSLPFPGALAQYLPLPGFPLPDSSQIPRAPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGQPATESNLGPPVYGSTFTPGNIKMEQIQRLDVAAVPPPPPPCIPTPSASCDVCQKRFKNEESVRKHKQKVHSENSEPGENQPMQSLDDDRDQSYHSLSPGAMEALFKQEFGVEQEDTSFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIYIQDSEKSPSNPGAAASWHQVQTSPLNLIVTETTGNSSESSDRPGEEHECKPCGLRFQTNGLHQAHRQKMHEIEEQRSPKQDYEVEITDQRPDSISEDLQKLQTMILQLNGLESSRGAPCAVCGREFETRLALRTHMTSDHGAIIEEPTSPCPVTEKSPTPIGGTVNCTVCDKEYLNHDLLRKHISEEHQNQNCTPATTPLPQAVPIPVTTTPTSAPVAQTERKASVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEEGTSGSTKQESYESSNSEDSALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLGDHGKAGVDKWRELEQQYQSAPRGGSSSSSNNRSAGPSRSAHQNSSLKIPNGLELGQHVKPTDYTGLGNQVLSNLFGTGSDDQQLKSYRCSYCNFTTTVLPFLFLHERSHVSPQGGTGLDNDRGLQCPICSQGFPQPELLHHHLLTQHQFPGLLTQFQPPTLNNIRPEISVDKHQVETKDQDQKEERRQSSPQTSSSLDVKQKSEEPAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHKTLGDPTDSVITELSKTLKDVANKHKVPASYATPQDMNSNPDKTIMQPFLIEECDLTTPGEESSSERRFAPALIYLPVKSRINGPLTASFTLSPA