Basic Information

Insect: Calameuta pallipes
Gene Symbol: -
Assembly: GCA_030142375.1
Location: JARQSW010000689.1:271625-275119[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00014 0.011 16.4 1.5 1 23 116 139 116 139 0.96

2 13 0.012 0.92 10.3 4.6 2 23 256 278 256 278 0.91

3 13 0.00092 0.072 13.8 1.7 2 23 335 357 335 357 0.95

4 13 6.6 5.2e+02 1.7 7.6 3 23 444 465 443 465 0.95

5 13 6.2 4.9e+02 1.7 2.9 1 23 515 538 515 538 0.94

6 13 0.00037 0.029 15.0 0.1 3 23 587 608 586 608 0.95

7 13 0.0039 0.31 11.8 0.2 2 23 635 657 634 657 0.93

8 13 0.0086 0.68 10.7 3.6 2 23 705 727 704 727 0.96

9 13 0.12 9.2 7.2 4.2 3 23 742 763 740 763 0.92

10 13 0.00022 0.017 15.8 0.2 2 23 808 830 808 830 0.93

11 13 0.054 4.3 8.2 1.6 1 23 917 939 917 939 0.98

12 13 0.00015 0.012 16.3 0.7 2 23 955 977 954 977 0.96

13 13 0.005 0.39 11.5 0.4 1 23 1046 1069 1046 1069 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00014	0.011	16.4	1.5	1	23	116	139	116	139	0.96
2	13	0.012	0.92	10.3	4.6	2	23	256	278	256	278	0.91
3	13	0.00092	0.072	13.8	1.7	2	23	335	357	335	357	0.95
4	13	6.6	5.2e+02	1.7	7.6	3	23	444	465	443	465	0.95
5	13	6.2	4.9e+02	1.7	2.9	1	23	515	538	515	538	0.94
6	13	0.00037	0.029	15.0	0.1	3	23	587	608	586	608	0.95
7	13	0.0039	0.31	11.8	0.2	2	23	635	657	634	657	0.93
8	13	0.0086	0.68	10.7	3.6	2	23	705	727	704	727	0.96
9	13	0.12	9.2	7.2	4.2	3	23	742	763	740	763	0.92
10	13	0.00022	0.017	15.8	0.2	2	23	808	830	808	830	0.93
11	13	0.054	4.3	8.2	1.6	1	23	917	939	917	939	0.98
12	13	0.00015	0.012	16.3	0.7	2	23	955	977	954	977	0.96
13	13	0.005	0.39	11.5	0.4	1	23	1046	1069	1046	1069	0.98

Sequence Information

Coding Sequence: ATGACGTCCACACTATCGCGCGGTGCGATCCTGCCTGATCCTGGCGAGCTGGACAGCGACGGTTCGAGCGGAGAAGAGCGGGACGCCAGGAAGCGTCTCCATGGCGACCTGGACAGCACCGGTCCGAAGAAGCGACGGAAACAGACGACCCCGGTGAGGTTCCCGGTGTCGTTGATGACTGGTGAACGAGCGGAGTCCGAGGACGACGGCGAAGACGAGGAGGCGGAGGTCGAGGAGGACGTCGAGGCTGAGCGGGAAGGTAAGCAGCAGCAGCGTCGTTCTTCCCAGGATTCGGTCACCGGTGATCATCGAGTAACGAGCAAGGACGAGAACCTGAATAACGAATTCCGCTGCCAATATTGTAgtcaatttttcgataacaAGGAAACTTTGAATCAGCATATAGATAGCGAGCATTATGTACAGTCGCGAGACCAAGTGCAGGTTAAGTTAGAGCCGAACCAGGAGCAGTCCGAGAGTCCAGTCAATCTGTCGGGACTCAGTATAAAGAGTTTCGCAGCATCTTGGTTGTCGGGTCAAGTTCAAGGTCAGCCACCGGGTCAAGTTCAGATACAGAGCGAAGACTGGACAGTCGGTAATACAGTGGCGCCCGTGAGCACGATACCAAATCATCTCCAGAGTCTACCGTTTCCTGGTGCCCTGGCGCAGTATCTTCCTCTACCTGGTTTCTCGCTACCAGACTCGAGTCCGATGTCAAGACCACCCATAGGCCCGGCCCCGGTAAGAATATTCAATCCGGACGCCTACTGCGACCTCTGCAACAAGGAGTTCTGCAACAAGTACTTCCTGAAGACACACAAAGCGAACAAGCACGGCATCTACGTGGACTCTCCAGGTCAGCCAACCACGGAATCCAATCTTGGTCCACCGGTTTACGGTGGCACGTTCACTGCTGCCAACATTAAGATGGAACAGATTCAGAGGTTAGACGTTGCAGCGgtgccgccgccgccgccgccgtgCATGCCGACGCTTACCGCCTCCTGCGACGTCTGTCAGAAGAGGTTCAAGAACGAAGAGTCCGTGAGGAAGCACAAGCAAAAGGTCCATTCCGAGAGCAGTGAGCCTGGTGAGAATCAGCCGATGCAGCCGCCATCCGTCGACGATGACCGGGACCAGAGTTATCACAGCTTAAGCCCAGGAGCTATGGAAGCACTTTTCAAGCAGGAGTTCGGCGTGGAACAGGAAGACACGAGCTTCATGCCGGCGCCTAGACACCTGTCGCCCCAGTCGATTCAGCAAGCCAGAGATTCGGGCTTCAACGCGGATCGTCTACGTAGACTAGGTGTTATCAACCCCGATGCCTTCTGCGAGATCTGCTGCAAGGAATATTGCAACAAGTACTTCCTGAGGACGCACAAGATGAAGCGCCACGGTATCTACATCCAGGACAGCGAGAAGTCACCCAGCAACCCTGGAGCGGCCGCCAGCTGGCACCAGGTGCAAACCAGTCCGCTCAACCTGATCGTAACCGAGACGACCGGAAACAGTTCAGAGTCCAGCGATCGACCTGGCGAAGAGCACGAGTGCAAACCTTGCGGACTAAGATTTCAGACAAACGGATTGCATCAGGCGCATAGGCAGAAGATGCACGAGATCGAAGAGCAAAGGTCACCCAAGCAGGATTACGAGGTCGAGATCACGGATCAGCGACCTGACTCCATTTCCGAAGATCTTCAGAAGCTCCAGACAATGATTCTGCAACTGAACGGTTTGGAATCCAGTCGCGGTGCACCCTGCGCAGTCTGTGGAAAAGAATTCGAAACCCGATTGGCTCTCAGGACTCATATGACCAGCGATCACGGCGCCATCATCGAGGAGCCGACGTCACCGTGTCCGGTGACAGAGAAGTCGCCGACGCCTACTGGCGGGACCGTCGTGAGCTGCACCGTTTGCGACAAGGAATATCTCAATCAAGATCTATTGAGAAAGCACATTAGCGAGGAACATCAGAATCAAAATCAGAATTCCACACCAGCGACGACGCCGCTTCCCCAGGCGGTGCCGATTCCTGTGACTACCACTCCGACGTCGGCGCCGGCGGCGCAGACCGAGCGCAAGGCGTCGGTGTCCATGACGCCAACGTCTAGCTACTGTGAGATATGCAATAAGGAGCTGTGCAACAAGTACTTCATGAAGACTCACATGCAGAGGATGCACggtattgaaattgaaaatggcgcCCAGATCGGTGGCGttatatgcaatatatgtaACAAGGAACTGTGCAGCAAGTACTTCCTCAGGGTTCACAAGCACAACACGCACGGGATCGTCGAAGAGGGCACTTCCGGTTCGACGAAGCAAGAATCTTACGAGTCCTCGAATAGCGAAGACTCGGCCTTGAAGCCCGAACAATTAGGCGACCTGAGTCACAGATACTTCACCCACTTCACCGAAGTGTGTCCGATATGCAGCAGAAGATTTAGAAGTACAAAATGGCTGAAGGCTCATCTACTGGGAGATCATGGGAAGGCAGGAGTGGACAAATGGCGTGAATTGGAACAACAGTACCAATCGACACCGCGAGGTGggaccagcagcagcagcagcagtaacAACAGATCAGCAGGACCTTCGAGGTCTACGCATCAGAACTCTAGCCTAAAAATACCAAACGGCCTGGAACTGGGTCAGCACGTTAAATCTACCGATTACACTGGTCTTGGCAATCAGGTACTGTCCAACTTATTCGGTTCCGGTTCCGAGGATCAGCAACTCAAGAGCTACAGGTGTTCCTACTGCAACTTCACGACGACGGTGCTGCCATTTTTGTTCCTTCACGAAAGATCTCACGTGAGTCCTCAGGGCGGAACTGGCCTGGAAAATGACAGGGGACTCCAATGTCCGATTTGCTCCCAGGGATTTCCGCAGCCTGAACTCCTCCACCATCATCTCCTGACTCAACATCAGTTTCCTGGACTGCTCACGCAATTCCAACCGCCGACGCTGAACAACATCAGGCCTGAATTGAGCGTCGATAAGCATCAAGTCGAAACGAAGGATCAGGATCAGAAGGAGGAGCGTCGGCAGAGTAGTCCTCAGACGTCATCAAGTTTGGAAGTTAAACAAAAAACTGAGGAACCCGCGGTTCAGGTGACACCTCAGGGCGCCTACAAGTGCGCCCAGTGTGGCTACGCTACTGCCAACCTCAATAGGATCAAGAAGCACATCAGGAAGGATCACAAGACTCTTGGCGATCCTACCGATAGCGTGATAACGGAACTGAGCAGGACTCTCAAGGACGTCGCCAACAAGCACAAAGTGCCAGCCAGTTACGCGATGCCGCAGGACATGAATTCGAATCCCGACAAGACGATAATGCAGCCGTTCCTTATAGAGGAgtgcgacgtcgcgacgcccggcgaAGAATCAAGCTCCGAGAGACGCTTCGCGCCGGCCCTCATTTATTTGCCCGTTAAATCGCGCATAAACGGCCCCTTGACTGCGTCCTTCACATTGAGTCCCGCCTGA
Protein Sequence: MTSTLSRGAILPDPGELDSDGSSGEERDARKRLHGDLDSTGPKKRRKQTTPVRFPVSLMTGERAESEDDGEDEEAEVEEDVEAEREGKQQQRRSSQDSVTGDHRVTSKDENLNNEFRCQYCSQFFDNKETLNQHIDSEHYVQSRDQVQVKLEPNQEQSESPVNLSGLSIKSFAASWLSGQVQGQPPGQVQIQSEDWTVGNTVAPVSTIPNHLQSLPFPGALAQYLPLPGFSLPDSSPMSRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGQPTTESNLGPPVYGGTFTAANIKMEQIQRLDVAAVPPPPPPCMPTLTASCDVCQKRFKNEESVRKHKQKVHSESSEPGENQPMQPPSVDDDRDQSYHSLSPGAMEALFKQEFGVEQEDTSFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIYIQDSEKSPSNPGAAASWHQVQTSPLNLIVTETTGNSSESSDRPGEEHECKPCGLRFQTNGLHQAHRQKMHEIEEQRSPKQDYEVEITDQRPDSISEDLQKLQTMILQLNGLESSRGAPCAVCGKEFETRLALRTHMTSDHGAIIEEPTSPCPVTEKSPTPTGGTVVSCTVCDKEYLNQDLLRKHISEEHQNQNQNSTPATTPLPQAVPIPVTTTPTSAPAAQTERKASVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEEGTSGSTKQESYESSNSEDSALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLGDHGKAGVDKWRELEQQYQSTPRGGTSSSSSSNNRSAGPSRSTHQNSSLKIPNGLELGQHVKSTDYTGLGNQVLSNLFGSGSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVSPQGGTGLENDRGLQCPICSQGFPQPELLHHHLLTQHQFPGLLTQFQPPTLNNIRPELSVDKHQVETKDQDQKEERRQSSPQTSSSLEVKQKTEEPAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHKTLGDPTDSVITELSRTLKDVANKHKVPASYAMPQDMNSNPDKTIMQPFLIEECDVATPGEESSSERRFAPALIYLPVKSRINGPLTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00253103;
90% Identity: iTF_01474985;
80% Identity: -