Basic Information

Insect: Trachelus troglodyta
Gene Symbol: -
Assembly: GCA_030142635.1
Location: JARQTJ010000680.1:221659-225132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00014 0.01 16.4 1.5 1 23 115 138 115 138 0.96

2 13 0.012 0.87 10.3 4.6 2 23 255 277 255 277 0.91

3 13 0.00091 0.068 13.8 1.7 2 23 334 356 334 356 0.95

4 13 6.6 4.9e+02 1.7 7.6 3 23 441 462 440 462 0.95

5 13 6.2 4.6e+02 1.7 2.9 1 23 512 535 512 535 0.94

6 13 0.00037 0.027 15.0 0.1 3 23 584 605 583 605 0.95

7 13 0.019 1.4 9.7 0.6 3 23 632 653 630 653 0.93

8 13 0.0086 0.64 10.7 3.6 2 23 699 721 698 721 0.96

9 13 0.12 8.6 7.2 4.2 3 23 736 757 734 757 0.92

10 13 0.00022 0.016 15.8 0.2 2 23 802 824 802 824 0.93

11 13 0.054 4 8.2 1.6 1 23 910 932 910 932 0.98

12 13 0.00015 0.011 16.3 0.7 2 23 948 970 947 970 0.96

13 13 0.005 0.37 11.5 0.4 1 23 1039 1062 1039 1062 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00014	0.01	16.4	1.5	1	23	115	138	115	138	0.96
2	13	0.012	0.87	10.3	4.6	2	23	255	277	255	277	0.91
3	13	0.00091	0.068	13.8	1.7	2	23	334	356	334	356	0.95
4	13	6.6	4.9e+02	1.7	7.6	3	23	441	462	440	462	0.95
5	13	6.2	4.6e+02	1.7	2.9	1	23	512	535	512	535	0.94
6	13	0.00037	0.027	15.0	0.1	3	23	584	605	583	605	0.95
7	13	0.019	1.4	9.7	0.6	3	23	632	653	630	653	0.93
8	13	0.0086	0.64	10.7	3.6	2	23	699	721	698	721	0.96
9	13	0.12	8.6	7.2	4.2	3	23	736	757	734	757	0.92
10	13	0.00022	0.016	15.8	0.2	2	23	802	824	802	824	0.93
11	13	0.054	4	8.2	1.6	1	23	910	932	910	932	0.98
12	13	0.00015	0.011	16.3	0.7	2	23	948	970	947	970	0.96
13	13	0.005	0.37	11.5	0.4	1	23	1039	1062	1039	1062	0.98

Sequence Information

Coding Sequence: ATGACGTCCACACTATCGCGCGGTGCGATCCTGCCTGATCCTGGCGAGCTGGACAGCGACGGTTCGAGTGGAGAAGAGCGAGACGCCAGGAAGCGTCTCCACGGCGACCTGGACAGCACCGGTCCGAAGAAGCGACGGAAACAGACGACCCCGGTGAGGTTCCCGGCGTCGCTGATGACTGGTGAACGAGCAGAGTCTGaggacgacggcgacgacgacgaagcGGAAGTCGACGAGGACGCCGAGGCTGAGCGGGAAGGTAAGCAGCAGCGTCGTTCTCCCCAGGACTCGGTCACCGGTGATCATCGAGTAACGAGCAAGGACGAGAACCTGAATAACGAATTCCGCTGCCAATATTGTAGTCAATTTTTCGATAACAAGGAAACTTTGAATCAGCATATAGATAGCGAGCACTATGTACAGTCGCGAGACCAAGTGCAGGTCAAATTAGAGCCGAGCCAGGAGCAGTCCGAGAGTCCTGTCAATCTGTCGGGACTCAGTATAAAGAGTTTCGCGGCATCTTGGTTGTCGGGCCAAGTTCAAGGTCAGCCACCGGGTCAGGTTCAGGTACAGAGCGAAGACTGGACGGTCGGTAACACAGTGGCACCCGTGAGCACGATACCAAATCATCTACAGAGTCTACCGTTTCCTGGTGCCCTGGCCCAGTATCTTCCTCTACCTGGTTTCTCGCTACCAGACTCGAGCCAGATATCAAGACCACCCATAGGTCCGGCCCCGGTACGAATATTCAATCCGGACGCCTACTGCGACCTCTGCAACAAGGAGTTCTGCAACAAGTACTTCCTGAAGACACACAAAGCGAACAAGCACGGCATCTACGTGGACTCGCCAGGTCAGCCAGCCACAGAATCCAATCTTGGTCCACCGATTTACGGTGGCACGTTCGCTGCTGGTAACATCAAGATGGAACAGATTCAGAGGTTAGACGTTGCAGCGGtaccaccgccaccgccgccgTGCATACCGACGCCCAGCGCCTCCTGCGACGTCTGTCAGAAGAGGTTCAAGAACGAAGAGTCCGTGAGGAAGCACAAGCAGAAGGTTCATTCGGAGAACAGTGAGCCTGGTGAGAATCAGCCGATGCAATCTTTGGACGATGATCGGGACCAGAGTTATCACAGTCTAAGCCCAGGAGCTATGGAAGCACTTTTCAAGCAGGAGTTCGGCGTGGAGCAGGAAGACACGAGCTTCATGCCGGCACCTAGACACCTGTCGCCCCAGTCGATTCAGCAAGCTAGGGATTCAGGTTTCAACGCAGATCGTCTACGTAGACTGGGTGTTATAAATCCTGACGCCTTCTGCGAGATCTGCTGCAAGGAATATTGTAACAAGTACTTCCTGAGGACGCACAAGATGAAGCGCCATGGTATCTACATCCAGGACAGCGAGAAGTCGCCAAGCAACCCTGGAGCAGCCGCCAGCTGGCACCAGGTGCAAACTAGTCCGCTCAACCTGATCGTGACCGAGACCACCGGGAACAGTTCAGAGTCCAGTGATCGACCTGGGGAGGAGCACGAGTGCAAGCCCTGCGGACTGAGATTTCAGACCAATGGATTGCATCAGGCGCACAGACAGAAGATGCACGAGATAGAAGAGCAAAGGTCACCCAAGCAGGATTACGAGGTCGAGATCACGGATCAGCGACCTGACTCTATTTCCGAAGATCTTCAGAAGCTCCAGACAATGATCCTGCAACTAAACGGTTTGGAATCTAGTCGCGGTGCACCCTGTGCCGTCTGtggaaaagaatttgaaacCCGATTGGCCCTCAGGACTCACATGACCAGCGATCACGGCGCCATCATCGAGGAGCCAACGTCACCGTGTCCGGTGACAGAGAAGTCGCCGACACCTATTGGCGGTACCGTGAACTGCACCGTTTGCGACAAGGAATATCTCAATCACGATCTACTGAGAAAGCACATCAGCGAGGAACATCAGAATCAGAATTGTACACCGGCGACGACACCGCTTCCCCAGGCGGTGCCGATTCCCGTAACTACTACTCCGACGTCGGCGCCGGCGGCCCAGACCGAGCGCAAGGCGTCGGTGTCCATGACGCCAACGTCCAGCTACTGTGAGATATGCAATAAGGAGTTGTGCAACAAGTACTTCATGAAGACTCACATGCAGAGGATGCACggtattgaaattgaaaatggggCCCAGATCGGTGGCGTtatatgcaatatatgtaACAAGGAACTGTGCAGCAAGTACTTCCTCAGGGTTCACAAGCACAACACGCACGGTATCGTCGAAGAGGGCACTTCCGGTTCGACGAAGCAAGAATCTTACGAGTCCTCGAATAGCGAAGACTCGGCCTTGAAACCCGAACAGTTAGGCGACCTGAGTCACAGATACTTCACCCACTTCACCGAAGTGTGTCCGATATGCAGCAGAAGATTTAGGAGTACGAAATGGCTGAAGGCTCATCTGCTGGGAGATCATGGCAAGGCAGGGGTGGACAAATGGCGTGAATTGGAACAACAGTACCAATCGGCACCACGAGGTgggagcagcagcagcagcagtaacAATAGATCGGCAGGACCTTCGAGGTCTGCGCATCAGAATTCTAGCCTAAAAATACCAAACGGCCTGGAACTGGGTCAGCACGTTAAATCTACCGATTACACTGGTCTTGGCAATCAGGTACTGTCGAACTTATTTGGTACCGGTTCCGACGATCAGCAACTCAAGACTTATAGGTGTTCCTACTGCAACTTCACGACGACGGTGCTGCCATTTTTGTTCCTTCACGAAAGGTCTCACGTGAGTCCTCAGGGCGGGACTGGCCTGGACAATGACAGGGGACTCCAATGTCCAATTTGCTCCCAGGGATTTCCACAGCCTGAACTCTTGCACCATCACCTCCTGACTCAACATCAGTTTCCTGGACTCCTCACGCAATTCCAACCGCCGACGCTGAACAACATCAGGCCTGAGATTAGCGTCGATAAGCATCAAGTTGAAACGAAGGATCAGGATCAGAAGGAGGAGCATCGGCAGAGTAGTCCTCAGACGTCATCAAGTTTGGAcgttaaacaaaaaagtgaGGAACCCGCGGTCCAGGTGACACCTCAGGGCGCCTACAAGTGCGCCCAGTGTGGCTACGCCACTGCCAACCTCAATAGGATCAAGAAGCACATCAGGAAGGATCACAAGACTCTCGGCGATCCTACTGATAGCGTGATAACGGAACTGAGCAAGACTCTCAAAGACGTCGCCAACAAGCACAAGGTCCCAGCCAGTTACGCGATGCCGCAGGACATGAATTCGAATCCGGACAAGACGATAATGCAGCCGTTCCTTATAGAGGAGTGCGACCTCACGACGCCCGGCGAAGAATCAAGCTCGGAGAGACGCTTCGCGCCGGCCCTCATTTATTTGCCTGTTAAATCGCGCATAAACGGCCCCTTGACTGCGTCCTTTACACTGAGTCCCGCCTGA
Protein Sequence: MTSTLSRGAILPDPGELDSDGSSGEERDARKRLHGDLDSTGPKKRRKQTTPVRFPASLMTGERAESEDDGDDDEAEVDEDAEAEREGKQQRRSPQDSVTGDHRVTSKDENLNNEFRCQYCSQFFDNKETLNQHIDSEHYVQSRDQVQVKLEPSQEQSESPVNLSGLSIKSFAASWLSGQVQGQPPGQVQVQSEDWTVGNTVAPVSTIPNHLQSLPFPGALAQYLPLPGFSLPDSSQISRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGQPATESNLGPPIYGGTFAAGNIKMEQIQRLDVAAVPPPPPPCIPTPSASCDVCQKRFKNEESVRKHKQKVHSENSEPGENQPMQSLDDDRDQSYHSLSPGAMEALFKQEFGVEQEDTSFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIYIQDSEKSPSNPGAAASWHQVQTSPLNLIVTETTGNSSESSDRPGEEHECKPCGLRFQTNGLHQAHRQKMHEIEEQRSPKQDYEVEITDQRPDSISEDLQKLQTMILQLNGLESSRGAPCAVCGKEFETRLALRTHMTSDHGAIIEEPTSPCPVTEKSPTPIGGTVNCTVCDKEYLNHDLLRKHISEEHQNQNCTPATTPLPQAVPIPVTTTPTSAPAAQTERKASVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEEGTSGSTKQESYESSNSEDSALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLGDHGKAGVDKWRELEQQYQSAPRGGSSSSSSNNRSAGPSRSAHQNSSLKIPNGLELGQHVKSTDYTGLGNQVLSNLFGTGSDDQQLKTYRCSYCNFTTTVLPFLFLHERSHVSPQGGTGLDNDRGLQCPICSQGFPQPELLHHHLLTQHQFPGLLTQFQPPTLNNIRPEISVDKHQVETKDQDQKEEHRQSSPQTSSSLDVKQKSEEPAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHKTLGDPTDSVITELSKTLKDVANKHKVPASYAMPQDMNSNPDKTIMQPFLIEECDLTTPGEESSSERRFAPALIYLPVKSRINGPLTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00253103;
90% Identity: iTF_01474985;
80% Identity: -