Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000541.1:133824-137303[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00037 0.025 15.0 3.0 1 23 115 138 115 139 0.96

2 13 0.012 0.79 10.3 4.6 2 23 255 277 255 277 0.91

3 13 0.00072 0.048 14.1 1.8 2 23 334 356 333 356 0.95

4 13 6.7 4.4e+02 1.7 7.6 3 23 443 464 442 464 0.95

5 13 7.6 5.1e+02 1.5 3.0 1 23 514 537 514 537 0.92

6 13 0.00072 0.048 14.1 0.1 3 23 586 607 585 607 0.94

7 13 0.01 0.67 10.5 0.7 3 23 634 655 632 655 0.93

8 13 0.0087 0.58 10.7 3.6 2 23 701 723 700 723 0.96

9 13 0.12 7.9 7.2 4.2 3 23 738 759 736 759 0.92

10 13 0.00022 0.015 15.8 0.2 2 23 804 826 804 826 0.93

11 13 0.055 3.7 8.2 1.6 1 23 912 934 912 934 0.98

12 13 7.5e-05 0.005 17.2 0.7 2 23 950 972 949 972 0.96

13 13 0.0051 0.34 11.5 0.4 1 23 1041 1064 1041 1064 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00037	0.025	15.0	3.0	1	23	115	138	115	139	0.96
2	13	0.012	0.79	10.3	4.6	2	23	255	277	255	277	0.91
3	13	0.00072	0.048	14.1	1.8	2	23	334	356	333	356	0.95
4	13	6.7	4.4e+02	1.7	7.6	3	23	443	464	442	464	0.95
5	13	7.6	5.1e+02	1.5	3.0	1	23	514	537	514	537	0.92
6	13	0.00072	0.048	14.1	0.1	3	23	586	607	585	607	0.94
7	13	0.01	0.67	10.5	0.7	3	23	634	655	632	655	0.93
8	13	0.0087	0.58	10.7	3.6	2	23	701	723	700	723	0.96
9	13	0.12	7.9	7.2	4.2	3	23	738	759	736	759	0.92
10	13	0.00022	0.015	15.8	0.2	2	23	804	826	804	826	0.93
11	13	0.055	3.7	8.2	1.6	1	23	912	934	912	934	0.98
12	13	7.5e-05	0.005	17.2	0.7	2	23	950	972	949	972	0.96
13	13	0.0051	0.34	11.5	0.4	1	23	1041	1064	1041	1064	0.98

Sequence Information

Coding Sequence: ATGACGTCCACACTATCGCGCGGTGCGGTCCTGCCTGATCCTGGCGAGCTGGACAGCGACGGTTCGAGCGGGGAGGAACGAGACGCCAGGAAGCGTCTCCATGGCGACCTGGACAGCACGGGTCCGAAGAAGCGACGGAAACAGACGACCCCGGTGAGGTTCCCGGTGTCGTTGATGACTGGTGAACGCGTGGAGTCcgaggacgacgacgaagacgaGGAAGCGGACGTCGACGAGGACGTCGAAGCCGAGCGGGAAGGTAAGCAGCAGCGTCGTTCTCCCCAGGAGTCGGTCACCGGTGATCATCGTGTAACGAGCAAGGACGAGAACCTGAATAACGAATTCCGCTGCCAATATTGTAGTCAATTTTTCGATAACAAGGAGACGTTGAATCAGCATATAGATAGCGAGCATCATGTACAGTCGCGAGATCAGGTGCAGGTCAAGGTAGAGCCAAGCCAAGAGCAGTCCGAGAGTCCTGTCAATCTGTCGGGACTCGGTATAAAGAGTTTCGCAGCATCCTGGTTGTCGGGTCAAGTTCAGGGTCAGCCACCGGGTCAGATTCAAGTACAGAGCGAGGACTGGACAGTCGGTAATACTGTGACACCTGTGAGCACAATACCAAGTCATCTTCAGAGTCTACCGTTTCCTGGTACCCTGGCGCAGTATCTTCCTCTACCTGGTTTCTCGCTACCAGACTCGAGTCAGATGTCGAGACCACCCATAGGTCCGGCCCCAGTACGAATATTCAATCCGGACGCCTACTGCGACCTCTGTAATAAGGAATTCTGCAACAAGTACTTCCTGAAGACACACAAAGCGAATAAGCACGGCATCTACGTGGATTCACCAGGTCAGGCAGCCACGGATTCCAATCTCGGTCCACCGGTTTACGGTGGCACGTTCGCTGCTGGTAATATTAAGATGGAACAGATTCAGAGGTTAGACGTTGCAGTGGtaccaccgccgccaccgccgTCTATACCGACGCCCAGCACCTCCTGTGACGTCTGTCAGAAGAGGTTCAAGAACGAAGAGTCCGTGAAGAAGCATAAGCAAAAAGTTCATATTGAGAATAATGAGGCTGGTGAGAGTCAGCCGATGCAGCCACCATCTGTCGACGATGACCGGGACCAAAGTTATCACAGCTTAAGTCCAGGAGCTATGGAAGCACTTTTCAAGCAGGAATTTGGCGTGGAACAGGAAGATACGACCTTCATGCCAGCACCTAGACATCTGTCGCCCCAGTCGATTCAGCAAGCTAGAGATTCTGGTTTCAATGCGGATCGTCTACGTAGATTGGGTGTCATCAATCCTGACGCCTTCTGCGAGATCTGCTGCAAGGAGTACTGTAACAAGTACTTCCTGAGGACGCACAAGATGAAACGCCATGGAATCTACATTCAGGACAGCGAAAAGTCACCCAGCAACCCTGGAGCAGCCGCCAGCTGGCACCAAGTGCAAACCAGTCCGCTGAACTTGATCGTTACCGAGACGACCGGAAACGGTTCAGAGTCTAGTGATCGACCTGGTGAAGAGTACGAATGCAAGCCTTGCGGACTAAGATTTCAGACGAGCGGATTGCATCACGCACACAGACAAAAGATGCACGAGAGCGATGAGCAAAGGTCACCCAAGCAGGATTATGAGGTCGAGATCACGGATCAGCGACCTGACTCCATTTCTGAAGATCTTCAGAAGCTCCAGACAATGATCCTCCAGCTAAACGGTTTGGAATCTAGTCGCGGTGCACCCTGTGCAGTCTGTGGGAAAGAATTTGAGACGCGATTAGCCCTCAGGAGTCACATGACGAACGATCACGGCGCCATCATCGACGAGCCGACGTCGCCCTGTCCGGTGACAGAAAAGTCCCCGGCATCCGGTGGAGGTACCGTTAACTGCACCATCTGCGACAAGGAATATCTTAATCACGATCTATTAAAAAAGCATATTAGCGAAGAACATCAGAATCAGAATTCCACACCGGCGACGACACCGCTTCCCCAGGTGGTGCCGATTCCTCTAACTACTACTCCAACGTCGGTGCCAGCCGCGCAGACCGAGCGCAAGGCGTCGGTATCCATGACGCCGACGTCTAGCTACTGTGAGATATGCAATAAGGAGTTGTGCAACAAGTACTTCATGAAGACTCACATGCAGAGGATGCACGGTATTGAAATCGAAAATGGCGCCCAGATCGGTGGCGTCATATGCAACATATGTAACAAGGAACTGTGCAGCAAATACTTTCTCAGGGTTCACAAGCACAACACGCACGGTATCGTTGAAGAGGGCACTTCCGGTTCGACGAAGCAGGAATCTTACGAGTCTTCGAATAGCGAAGATTCGGCATTAAAACCTGAACAATTGGGCGATCTGAGTCACAGGTATTTCACCCATTTCACTGAAGTGTGTCCGATATGCAGTAGAAGATTTAGAagtacaaaatggctgaaggCTCATCTATTGGGCGATCATGGCAAGGCAGGAGTGGATAAATGGCGCGAATTGGAGCAACAGTACCAGTCGACACCACGGGGTggtggcagcagcagcagcaacagcaataGGTCGGCAGGACCTTCAAGGTCAACGCATCAAGTTCCTAGTCTCAAAATACCAAATGGCCTGGAACTAGGTCAACACGTTAAATCTACGGATTACACTGGCCTTGGCAATCAAGTACTATCTAGTTTATTCGGCGCTGGTTCCGAAGATCAGCAACTCAAGAGCTACAGGTGTTCCTACTGTAACTTCACGACAACGGTGCTGCCATTTTTGTTCCTTCACGAAAGATCCCACGTGAGTCCCCAGGGTGGAACGGGCCTGGACAATGAAAGAGGACTTCAATGTCCAATTTGCTCCCAGGCATTTCCACAGCCTGAACTCCTGCACCATCACCTCCTGACTCAACATCAGTTTCCTGGATTGCTCACGCAATTCCAGCCGCCGGTGCTGAACAACATCAGGCCTGAAGTTGGCGTCGATAAGCATCAGATCGAAACGAAGGATCAGGATCAGAAGGAAGAACGTCGGCAGAGTAGTCCTCAGACGTCATCAGGTTTAGATCCCAAACAAAAAACTGAGGAACCAGCTGTTCAGGTTACACCTCAGGGCGCCTACAAGTGCGCCCAATGTGGCTACGCTACTGCCAACCTTAATAGGATCAAGAAGCACATCAGGAAGGATCACAAGACCCTTGGTGATCCTACTGATTGCGTGATAACGGAACTGAGCAAGACGCTCAAGGACGTCGCCAACAAGCACAAGGTCCCGGCGAGTTACGCGATGCCGCAGGACATGAACTCGAATCCTGATAAGACGATAATGCAGCCGTTCCTTATAGAGGAAtgtgacgtcgcgacgcctggcgAAGAGTCAAGCTCGGAGAGACGCTTCGCGCCGGCCCTCATTTATTTACCCGTTAAAACGCGCATAAATGGCGCATTGACTGCGTCCTTTACACTGAGTCCCGCCTGA
Protein Sequence: MTSTLSRGAVLPDPGELDSDGSSGEERDARKRLHGDLDSTGPKKRRKQTTPVRFPVSLMTGERVESEDDDEDEEADVDEDVEAEREGKQQRRSPQESVTGDHRVTSKDENLNNEFRCQYCSQFFDNKETLNQHIDSEHHVQSRDQVQVKVEPSQEQSESPVNLSGLGIKSFAASWLSGQVQGQPPGQIQVQSEDWTVGNTVTPVSTIPSHLQSLPFPGTLAQYLPLPGFSLPDSSQMSRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGQAATDSNLGPPVYGGTFAAGNIKMEQIQRLDVAVVPPPPPPSIPTPSTSCDVCQKRFKNEESVKKHKQKVHIENNEAGESQPMQPPSVDDDRDQSYHSLSPGAMEALFKQEFGVEQEDTTFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIYIQDSEKSPSNPGAAASWHQVQTSPLNLIVTETTGNGSESSDRPGEEYECKPCGLRFQTSGLHHAHRQKMHESDEQRSPKQDYEVEITDQRPDSISEDLQKLQTMILQLNGLESSRGAPCAVCGKEFETRLALRSHMTNDHGAIIDEPTSPCPVTEKSPASGGGTVNCTICDKEYLNHDLLKKHISEEHQNQNSTPATTPLPQVVPIPLTTTPTSVPAAQTERKASVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEEGTSGSTKQESYESSNSEDSALKPEQLGDLSHRYFTHFTEVCPICSRRFRSTKWLKAHLLGDHGKAGVDKWRELEQQYQSTPRGGGSSSSNSNRSAGPSRSTHQVPSLKIPNGLELGQHVKSTDYTGLGNQVLSSLFGAGSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVSPQGGTGLDNERGLQCPICSQAFPQPELLHHHLLTQHQFPGLLTQFQPPVLNNIRPEVGVDKHQIETKDQDQKEERRQSSPQTSSGLDPKQKTEEPAVQVTPQGAYKCAQCGYATANLNRIKKHIRKDHKTLGDPTDCVITELSKTLKDVANKHKVPASYAMPQDMNSNPDKTIMQPFLIEECDVATPGEESSSERRFAPALIYLPVKTRINGALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00253103;
90% Identity: iTF_01474985;
80% Identity: iTF_01199682;