Talt016719.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947859335.1
- Location
- OX401968.1:22281023-22282402[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00037 8.3 6.9 0.1 18 51 166 200 163 201 0.86 2 6 0.00032 7.2 7.1 0.1 21 45 230 254 225 261 0.88 3 6 1.6e-05 0.35 11.3 0.0 21 47 286 312 271 316 0.83 4 6 0.073 1.6e+03 -0.4 0.1 19 30 339 351 323 365 0.75 5 6 0.00072 16 6.0 0.2 16 48 362 394 351 397 0.86 6 6 0.51 1.1e+04 -3.1 0.1 5 16 446 457 443 457 0.79
Sequence Information
- Coding Sequence
- ATGGATTTAAAAATTTGCCGTTTATGCTGTGAAAAGGAAGGAACTTACTATATATTTAGCGACGACAATGGCGTATCAATTTACACTAAAATACAGTACTGCTGCGCGAAAGTAAAAATTGCCGAAGCTGACGGGCTGCCGGCTCACGTTTGCGGGCCTTGTGAGGCCGAACTAACGGCGTTCTACAAATTCGTGTTAAAGTGCGAAGCCACTGATCAGTTATTACGCTGTAGGGCTACTGAAACTTGCGAATCTGATAAGTTCGATTGCAAATTAAAGATCGAAGTGAAACAAGAAGACTGCGACGTAGGTCACCAGTACGAGGATGCGGACGAAACGATTGAAACTTATCCATATCTTGATCTCGGTGTTAAATTGGAGGACAAACCTAAACGCGCCTACAAGAAACGAGCGCGACTTAAAGTTAGGGGTAATTGCAAGTGTAAAGAGTGCGGGCGCGTGTGCGCGAGCCGGTCGGCGCTGCTCATCCACAGCCGCGTGCACTCCGGGGAGCGCCCTTTCCACTGCCGCTCCTGTGATAAAAAGTATGCAGATGGTGGTGGCCTAAAGCGACATGTAGAAAGAAACCATTTTGGCAAACTAAGAGAAAGAAAATTCATTTGCGAAAACTGTGGCAAGGCATTCTATACCAAAACTGATGTGGCTGTCCATATGCGCACTCATACTGGCGAAACACCATATGCTTGCACAATATGCCCATCCAAATTCACACAGAGTAGTGCCATGCTGCGGCACATTAAAACACATTCAGCAGAGAAGTCACATGGCTGCCAAACTTGCGGTAAAATGTTTGGTACAAAAGAGAAACTAAAAAGCCATATTAAAACTCATACAACTGAAAAACAATACAGTTGCCCACTATGTAGCTCTTTATTTAAGTATAAAAGCAATCTGAAGAAACATTTGAGATTGCATGCCGAGCCTAACAGGTTTGTTTGCAATTACTGCGGGCGCACTTTCAACGTAAAAGGTAATTTGAAATTGCATATAAATTCACAGCATTCTGAAAAGTCTGGATATTGCAGTATATGTACTAAAAATGTACCTAACATGGATACTCACATGTGGCGACATACAGGTGAGAGACCTCTCAAGTGCGAGCTTTGTACGAGTAGCTTTTATGAACTGAAAGCTCTGGCTCACCACATGAATTTTAGACACAAGAACACTGACAAGTATAAGTGCCAAGTTGAAGGATGCGGGATGACGTTTCCATCAAGACCGATGCTTGCATTCCACAATGCTAAGCTCCATGACACACAGATCCCGTTTCCTTGTGACAGATGTTCTAGAGGGTTCTACAGGAAAAACGATCTTGCAAGGCATAAAATAGGAACACATAAGGAAAGACTGACTTGA
- Protein Sequence
- MDLKICRLCCEKEGTYYIFSDDNGVSIYTKIQYCCAKVKIAEADGLPAHVCGPCEAELTAFYKFVLKCEATDQLLRCRATETCESDKFDCKLKIEVKQEDCDVGHQYEDADETIETYPYLDLGVKLEDKPKRAYKKRARLKVRGNCKCKECGRVCASRSALLIHSRVHSGERPFHCRSCDKKYADGGGLKRHVERNHFGKLRERKFICENCGKAFYTKTDVAVHMRTHTGETPYACTICPSKFTQSSAMLRHIKTHSAEKSHGCQTCGKMFGTKEKLKSHIKTHTTEKQYSCPLCSSLFKYKSNLKKHLRLHAEPNRFVCNYCGRTFNVKGNLKLHINSQHSEKSGYCSICTKNVPNMDTHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKYKCQVEGCGMTFPSRPMLAFHNAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463531; iTF_00009669; iTF_00009345; iTF_01136042; iTF_00325679; iTF_01135055; iTF_00156504; iTF_00156859; iTF_00342463; iTF_00155907; iTF_00155554; iTF_00021556; iTF_00462643; iTF_00010426; iTF_00010763; iTF_00023036; iTF_01464702; iTF_01464388;
- 90% Identity
- iTF_01463531;
- 80% Identity
- iTF_01463531;