Axyl023269.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947563465.1
- Location
- OX387357.1:20376163-20377536[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00055 8.6 7.3 0.0 22 51 169 198 164 199 0.88 2 6 0.00024 3.7 8.5 0.1 21 45 228 252 223 260 0.90 3 6 5.5e-05 0.86 10.5 0.0 21 47 284 310 281 314 0.90 4 6 0.1 1.6e+03 0.1 0.1 18 31 337 350 323 363 0.75 5 6 0.0024 37 5.3 0.1 18 48 362 392 356 395 0.92 6 6 1 1.6e+04 -3.1 0.1 5 16 444 455 441 455 0.79
Sequence Information
- Coding Sequence
- ATGGACCAAAAAATTTGTCGGTTGTGCTGCGAGAATGAAGGCTCTTCGTCCATGTTTAGCGAAGATAATGGCATATCAATTTACACTAAAATGCAACATTGCTGCGCTAATGTGAAGATTAGCGAAGGCGACGGGCTTCCGAGCAGCGTTTGCGGCCCCTGCGTCACACAGCTAACGGCGACATACACCTTTGTTCTAAAGTGCGAAGCTGCTGACCAAATACTCCGGTGCAGAGCCGCCGAAATCTCCCAACAGGACAGTCTCGATTGTAAGTTGAAGATTGAGGTGAAGCATGAGGACGACGACCACCGCTACGAGGATGACACTGAAATTGACGAAACATACCCGTATCTCGATCTTAACGTAAAAGTAGAAGATAGACCTAAACGCGCGTATAAAAAACGAGCGCGGATTAAGGTTAAAGAGACTTGGAGATGCAAGGAGTGCGGGCGAGTGTGCGCCAGCAAGTCCGCGCTGCTTATACACGGCCGTGTACACACCGGCGAGCGGCCATTCAAGTGCGCAACCTGTGATAAGAGATACGCTGACGGCGGTGGCCTGAAGAGACACATTGAAAGAAATCATTTCGGCAAGCTACGAGAACGAAAATTTATCTGCGAGAACTGTGGCAAAGGATTCTTCACCAAATGTGATGTTGCTGTCCACATGCGCACACATACTGGAGAAACCCCTTATGCTTGTGCCATATGCCCCTCAAAATTCACACAAAGCAGCGCCATGCTGCGACACCTCAAAACGCATTCCGGAGAGAAATCCCACGGTTGCCACACATGCGGCAAGATGTTTGGCACAAAAGACAAACTGAGAACCCACCTCCTAACTCACACGACTGAAAAAAAGTTCACCTGCCCGCTCTGTAACACTCTTTTCAAATATAACAGTAGTCTGAAGAAGCATTTGAAGCTACATGCGGAACCAAATAGTTTTGTGTGTAATTATTGCGGACGAACATTTAATGTCAAAGGCAATTTGAAATTGCACATCAGTTCGCAGCACTCTGAGAAATCTGGGTTCTGCAGCATTTGCGCCAAGAATGTTTCGAATATGGCCACTCATATGTGGCGGCATACTGGGGAAAGGCCTCTGAAGTGTGAGCTTTGCACAAGTAGCTTTTACGAACTGAAAGCTTTAGCTCACCATATGAATTTTAGACACAAGAATACAGATAAGTTCAAGTGCTTGATAGAGGGCTGTGGTATGTCGTTCCCGTCTCGGCCGATGCTGACGTTCCACCACGCTAAGCTGCACGACACCCAGATCCCGTTCCCTTGTGATAGATGTTCCAGAGGATTTTATAGGAAGAATGATCTTGCCAGGCACAAGATAGGTACACACAAAGAAAGACTGACATAG
- Protein Sequence
- MDQKICRLCCENEGSSSMFSEDNGISIYTKMQHCCANVKISEGDGLPSSVCGPCVTQLTATYTFVLKCEAADQILRCRAAEISQQDSLDCKLKIEVKHEDDDHRYEDDTEIDETYPYLDLNVKVEDRPKRAYKKRARIKVKETWRCKECGRVCASKSALLIHGRVHTGERPFKCATCDKRYADGGGLKRHIERNHFGKLRERKFICENCGKGFFTKCDVAVHMRTHTGETPYACAICPSKFTQSSAMLRHLKTHSGEKSHGCHTCGKMFGTKDKLRTHLLTHTTEKKFTCPLCNTLFKYNSSLKKHLKLHAEPNSFVCNYCGRTFNVKGNLKLHISSQHSEKSGFCSICAKNVSNMATHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKFKCLIEGCGMSFPSRPMLTFHHAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463832;
- 90% Identity
- iTF_00155907;
- 80% Identity
- iTF_00156504;