Tvir017591.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963241965.1
- Location
- OY725186.1:13085951-13087315[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00044 13 6.7 0.1 21 51 165 195 159 196 0.86 2 7 0.00011 3 8.7 0.1 21 45 225 249 219 258 0.89 3 7 0.074 2.1e+03 -0.4 0.0 20 43 252 275 249 279 0.73 4 7 1.9e-05 0.55 11.1 0.0 21 47 281 307 266 312 0.84 5 7 0.13 3.7e+03 -1.2 0.0 27 53 315 341 314 342 0.79 6 7 0.00031 8.8 7.2 0.1 6 48 347 389 344 393 0.89 7 7 0.5 1.4e+04 -3.1 0.1 5 16 441 452 438 452 0.79
Sequence Information
- Coding Sequence
- ATGGATAAAAAGATTTGCCGATTGTGCTGTGAAAATGTAGGAACTTATTGTATATTTAGCGACGACAATGGCGTGTCAATTTACTCTAAAATGCTTTGCTGCTGCGTTAAAGTAAAAATCAGCGAAGGTGATGGGCTACCAACTCACGTTTGTGGACCTTGCGAGGCTGAATTAACAGCGTCCTATAACTTTGTGCTTAAGTGTGAAGCAACCGACCAAATACTACACTGTAGAGCAGATGAAATTGCGGATTCCAacaaatttaattgtaaattaaagATCGAAGTAAAACAAGAAGACTACGACGATGCCGAGGATCCATGTGAAGCTTATCCTTATCTTGATTTAAATGATATTAAAGAGGAGGAGAAACCCAAACGCGCGTATAAGAAGCGAGCTCGGCTTAAAGATGGAagtaattataaatgcaaagaATGCGGACGTGTGTGTGCGAGCCAGTCGGCCCTGCTGATACATAGCCGCGTACACACAGGGGAGCGCCCGTTTCAGTGCCGCTCTTGCGACAAAAAGTATGCTGATCAGGGTGGCTTAAAAAGACACATAGAAAGAAACCATTTTGGCAAACTAAGAGAACGCAAATTTATTTGCGAAAACTGCGGCAAAGCGTTCTACACCAAAACTGATGTGGGTGTCCATATGCGCACTCACACTGGTGAAACGCCATATGCTTGCAGCATTTGCCCATCAAAATTTACCCAAAGCAGTGCCATGTTGCGTCACCTCAAAACACATTCTTCAGAAAAGTCACATGGATGCCCAACCTGTGGAAAAACGTTTGGTACAAAAGAGAAACTAAAAAGCCATTTTAAAACACATACAACAGAGAAACAGTACAGTTGTCCATTGTGCAACtcgctatttaaatataaaggtAATCTAAAGAAACATTTAAGACTACATGCAGAGCCGAACAGGTTTGTTTGCAATTACTGTGGTCGCACTTTTAATGCCAAAGGCAATTTGAAGTTGCATATAAACTCGCAGCATTCTGAAAAGTCTGGGTTTTGTAGTATCTGTGCCAAAAATGTACCTAATATGGACACTCATATGTGGAGACACACTGGTGAGAGGCCTTTGAAATGTGAGCTTTGTACAAGTAGCTTTTATGAATTGAAAGCTTTGGCGCACCATATGAACTTCAGGCATAAGAACACTGATAAGTTCAAGTGCCAAGTAGAGGGCTGCACAATGACGTTTCCATCAAGACCAATGCTTGCATTTCATAATGCTAAGCTTCATGATACGCAGATCCCCTTCCCTTGCGACAGATGTTCTAGAGGCTTCTACAGGAAAAATGATCTTGCTAGGCATAAGATAGGAACACATAAGGAAAGACTGACCTGA
- Protein Sequence
- MDKKICRLCCENVGTYCIFSDDNGVSIYSKMLCCCVKVKISEGDGLPTHVCGPCEAELTASYNFVLKCEATDQILHCRADEIADSNKFNCKLKIEVKQEDYDDAEDPCEAYPYLDLNDIKEEEKPKRAYKKRARLKDGSNYKCKECGRVCASQSALLIHSRVHTGERPFQCRSCDKKYADQGGLKRHIERNHFGKLRERKFICENCGKAFYTKTDVGVHMRTHTGETPYACSICPSKFTQSSAMLRHLKTHSSEKSHGCPTCGKTFGTKEKLKSHFKTHTTEKQYSCPLCNSLFKYKGNLKKHLRLHAEPNRFVCNYCGRTFNAKGNLKLHINSQHSEKSGFCSICAKNVPNMDTHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKFKCQVEGCTMTFPSRPMLAFHNAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463832;
- 90% Identity
- iTF_00010426;
- 80% Identity
- iTF_01464388;