Acra013924.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947859365.1
- Location
- OX402059.1:1247899-1249269[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3e-05 0.0043 18.0 0.3 2 23 144 165 143 165 0.96 2 10 0.00014 0.0096 16.9 0.2 1 23 171 194 171 194 0.97 3 10 1.1e-05 0.00075 20.4 2.1 1 23 203 225 203 225 0.98 4 10 5.2e-05 0.0035 18.3 0.3 1 23 231 253 231 253 0.98 5 10 8.2e-06 0.00056 20.8 1.1 3 23 261 281 260 281 0.99 6 10 0.00016 0.011 16.8 1.4 1 23 287 309 287 309 0.97 7 10 6.7e-07 4.5e-05 24.3 0.7 1 23 315 338 315 338 0.96 8 10 0.04 2.7 9.2 1.6 2 23 369 391 368 391 0.94 9 10 0.14 9.2 7.6 0.5 1 23 397 422 397 422 0.89 10 10 0.0007 0.048 14.7 0.6 1 23 428 451 428 451 0.91
Sequence Information
- Coding Sequence
- ATGGACCAAAAAATTTGTCGGTTGTGCTGCGAGAATGAAGGCTCTTCGTCCATGTTTAGCGAAGATAATGGCATATCAATTTACACCAAAATGCAACATTGCTGCGCTAATGTGAAGATTAGCGAAGGCGACGGACTTCCGAGCAGCGTTTGCGGCCCCTGCATCACACAGCTAACGGCGACATACACCTTTATTCTAAAATGCGAAGCTGCTGATCAAATACTCCGGTGCAGAGCCGCCGAAATCTCCCAACAAGACAGTCTCGATTGTAAGTTGAAGATTGAGGTGAAGCATGAAGACGACCACCGCTACGAGGATGACACTGAAATTGACGAAACATACCCGTATCTCGATCTTAACGTTAAAGTAGAAGATAGACCTAAACGCGCGTATAAAAAACGAGCGCGGATTAAAGTGAAAGAAACTTGGAGATGCAAGGAGTGCGGGCGAGTGTGCGCCAGCAAGTCCGCGCTGCTCATACACGGCCGTGCCCACACCGGCGAGCGGCCATTCAAGTGCGCAACCTGTGATAAGAGATACGCTGACGGCGGTGGTCTTAAAAGACACATTGAAAGAAATCATTTTGGCAAGCTACGAGAACGAAAATTTATCTGCGAGAACTGTGGCAAAGGGTTCTTCACCAAATGTGATGTCACCGTCCACATGCGCACACATACTGGAGAAACCCCTTACGCTTGTGCCATATGCCCCTCAAAATTCACACAAAGCAGCGCCATGCTGCGACACCTCAAAACGCATTCCGGAGAGAAATCCCATGGTTGCAACACATGCGGCAAGATGTTTGGCACAAAAGACAAACTGAGAACCCACCTCCTAACTCACACGACTGAAAAAAAATTCATCTGCCCACTCTGCAACTCTCTTTTTAAATATAACAGCAGTCTGAAGAAGCATTTGAAGCTACATGCGGAACCAAATAGTTTTGTGTGCAATTATTGCGGACGAACATTTAATGTTAAGGGCAATTTGAAATTGCACATCAGTTCGCAGCACTCTGAGAAATCTGGGTTCTGCAGCATTTGCGCCAAGAATGTTTCGAATATGGACACTCATATGTGGCGGCATACTGGGGAAAGGCCTCTGAAGTGTGAGCTTTGCACAAGTAGCTTTTACGAACTGAAAGCTTTAGCTCACCATATGAATTTTAGACACAAGAATACGGATAAGTTCAAGTGCTTGATAGAGGGCTGTGGTATGTCGTTCCCGTCTCGGCCGATGCTGACGTTCCACCACGCTAAGCTGCACGACACACAAATCCCGTTCCCTTGTGATAGATGTTCCAGAGGGTTTTATAGGAAGAATGATCTTGCCAGGCACAAGATAGGTACACACAAAGAAAGACTGACATAG
- Protein Sequence
- MDQKICRLCCENEGSSSMFSEDNGISIYTKMQHCCANVKISEGDGLPSSVCGPCITQLTATYTFILKCEAADQILRCRAAEISQQDSLDCKLKIEVKHEDDHRYEDDTEIDETYPYLDLNVKVEDRPKRAYKKRARIKVKETWRCKECGRVCASKSALLIHGRAHTGERPFKCATCDKRYADGGGLKRHIERNHFGKLRERKFICENCGKGFFTKCDVTVHMRTHTGETPYACAICPSKFTQSSAMLRHLKTHSGEKSHGCNTCGKMFGTKDKLRTHLLTHTTEKKFICPLCNSLFKYNSSLKKHLKLHAEPNSFVCNYCGRTFNVKGNLKLHISSQHSEKSGFCSICAKNVSNMDTHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKFKCLIEGCGMSFPSRPMLTFHHAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463832;
- 90% Identity
- iTF_00155907;
- 80% Identity
- iTF_00155907;