Basic Information

Insect: Tortrix viridana
Gene Symbol: ZIPIC
Assembly: GCA_963241965.1
Location: OY725186.1:13085951-13087315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2e-06 0.00026 21.9 0.6 1 23 141 163 141 163 0.99

2 10 2.2e-05 0.0017 19.3 0.6 1 23 169 192 169 192 0.97

3 10 4e-06 0.00032 21.6 0.3 1 23 201 223 201 223 0.98

4 10 1.8e-05 0.0014 19.6 0.5 1 23 229 251 229 251 0.98

5 10 8.4e-06 0.00067 20.6 1.3 3 23 259 279 258 279 0.99

6 10 2.6e-05 0.002 19.1 1.5 1 23 285 307 285 307 0.98

7 10 7.3e-07 5.9e-05 24.0 0.6 1 23 313 336 313 336 0.97

8 10 0.035 2.8 9.2 1.6 2 23 367 389 366 389 0.94

9 10 1.3 1e+02 4.3 0.2 1 17 395 413 395 420 0.84

10 10 0.00061 0.049 14.8 0.6 1 23 426 449 426 449 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2e-06	0.00026	21.9	0.6	1	23	141	163	141	163	0.99
2	10	2.2e-05	0.0017	19.3	0.6	1	23	169	192	169	192	0.97
3	10	4e-06	0.00032	21.6	0.3	1	23	201	223	201	223	0.98
4	10	1.8e-05	0.0014	19.6	0.5	1	23	229	251	229	251	0.98
5	10	8.4e-06	0.00067	20.6	1.3	3	23	259	279	258	279	0.99
6	10	2.6e-05	0.002	19.1	1.5	1	23	285	307	285	307	0.98
7	10	7.3e-07	5.9e-05	24.0	0.6	1	23	313	336	313	336	0.97
8	10	0.035	2.8	9.2	1.6	2	23	367	389	366	389	0.94
9	10	1.3	1e+02	4.3	0.2	1	17	395	413	395	420	0.84
10	10	0.00061	0.049	14.8	0.6	1	23	426	449	426	449	0.91

Sequence Information

Coding Sequence: ATGGATAAAAAGATTTGCCGATTGTGCTGTGAAAATGTAGGAACTTATTGTATATTTAGCGACGACAATGGCGTGTCAATTTACTCTAAAATGCTTTGCTGCTGCGTTAAAGTAAAAATCAGCGAAGGTGATGGGCTACCAACTCACGTTTGTGGACCTTGCGAGGCTGAATTAACAGCGTCCTATAACTTTGTGCTTAAGTGTGAAGCAACCGACCAAATACTACACTGTAGAGCAGATGAAATTGCGGATTCCAacaaatttaattgtaaattaaagATCGAAGTAAAACAAGAAGACTACGACGATGCCGAGGATCCATGTGAAGCTTATCCTTATCTTGATTTAAATGATATTAAAGAGGAGGAGAAACCCAAACGCGCGTATAAGAAGCGAGCTCGGCTTAAAGATGGAagtaattataaatgcaaagaATGCGGACGTGTGTGTGCGAGCCAGTCGGCCCTGCTGATACATAGCCGCGTACACACAGGGGAGCGCCCGTTTCAGTGCCGCTCTTGCGACAAAAAGTATGCTGATCAGGGTGGCTTAAAAAGACACATAGAAAGAAACCATTTTGGCAAACTAAGAGAACGCAAATTTATTTGCGAAAACTGCGGCAAAGCGTTCTACACCAAAACTGATGTGGGTGTCCATATGCGCACTCACACTGGTGAAACGCCATATGCTTGCAGCATTTGCCCATCAAAATTTACCCAAAGCAGTGCCATGTTGCGTCACCTCAAAACACATTCTTCAGAAAAGTCACATGGATGCCCAACCTGTGGAAAAACGTTTGGTACAAAAGAGAAACTAAAAAGCCATTTTAAAACACATACAACAGAGAAACAGTACAGTTGTCCATTGTGCAACtcgctatttaaatataaaggtAATCTAAAGAAACATTTAAGACTACATGCAGAGCCGAACAGGTTTGTTTGCAATTACTGTGGTCGCACTTTTAATGCCAAAGGCAATTTGAAGTTGCATATAAACTCGCAGCATTCTGAAAAGTCTGGGTTTTGTAGTATCTGTGCCAAAAATGTACCTAATATGGACACTCATATGTGGAGACACACTGGTGAGAGGCCTTTGAAATGTGAGCTTTGTACAAGTAGCTTTTATGAATTGAAAGCTTTGGCGCACCATATGAACTTCAGGCATAAGAACACTGATAAGTTCAAGTGCCAAGTAGAGGGCTGCACAATGACGTTTCCATCAAGACCAATGCTTGCATTTCATAATGCTAAGCTTCATGATACGCAGATCCCCTTCCCTTGCGACAGATGTTCTAGAGGCTTCTACAGGAAAAATGATCTTGCTAGGCATAAGATAGGAACACATAAGGAAAGACTGACCTGA
Protein Sequence: MDKKICRLCCENVGTYCIFSDDNGVSIYSKMLCCCVKVKISEGDGLPTHVCGPCEAELTASYNFVLKCEATDQILHCRADEIADSNKFNCKLKIEVKQEDYDDAEDPCEAYPYLDLNDIKEEEKPKRAYKKRARLKDGSNYKCKECGRVCASQSALLIHSRVHTGERPFQCRSCDKKYADQGGLKRHIERNHFGKLRERKFICENCGKAFYTKTDVGVHMRTHTGETPYACSICPSKFTQSSAMLRHLKTHSSEKSHGCPTCGKTFGTKEKLKSHFKTHTTEKQYSCPLCNSLFKYKGNLKKHLRLHAEPNRFVCNYCGRTFNAKGNLKLHINSQHSEKSGFCSICAKNVPNMDTHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKFKCQVEGCTMTFPSRPMLAFHNAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01463832;
90% Identity: iTF_00010426;
80% Identity: iTF_01464702;