Alat023773.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963966035.1
- Location
- OZ014452.1:16745599-16746984[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00085 17 6.7 0.1 21 51 172 202 165 203 0.86 2 8 0.00029 5.7 8.3 0.1 21 45 232 256 227 260 0.90 3 8 0.034 6.8e+02 1.6 0.0 20 45 259 284 256 287 0.86 4 8 4.4e-05 0.88 10.9 0.1 22 47 289 314 285 318 0.87 5 8 0.34 6.8e+03 -1.6 0.0 28 53 323 348 321 349 0.75 6 8 0.13 2.6e+03 -0.2 0.1 20 31 342 354 327 368 0.72 7 8 0.0031 63 4.9 0.0 18 48 366 396 354 400 0.91 8 8 1 2e+04 -3.1 0.1 5 16 448 459 445 459 0.79
Sequence Information
- Coding Sequence
- ATGGATAAGAATATTTGCCGGTTGTGCTGCGAAAATGTAGGAACCTGTTATATATTTAGCAACGACAATGGCGTGTCAATTTACTCAAAAATGCTTTGCTGCTGCGTTAAAGTAAAAATTTGCGAAGGCGATGGGCTACCCACTCACGTTTGTGGACCTTGCGAGACTGAATTAACTGCGTCCTATAACTTTGTGCTGAAGTGTGAAGCATCTGATCAAATACTACGCTGTAGAGCTGATGAAATTGAGGATTCCAACAAGCTTGATTGTAAATTGAAGATCGAAGTAAAACAAGAGGACTGCGAGGACAACCACCACCACTACGAAGATGCTGAGGAACCAAGTGACGGTTATGcgtatcttaaattaaataatgttaaagAGGAGGAGAAACCCAAACGCGCGTATAAGAAGCGGGCGCGGCTCAAAGGTGGAAGTAATTGCAAGTGTAAAGAGTGCGGACGCGTGTGTGCAAGCCAGTCAGCGCTAGTCATACACAGCCGAGTGCACACAGGGGAGCGACCGTTCCAGTGCCGCTCTTGTGACAAAAAGTATGCTGATCAGGGTGGCTTAAAGCGGCACATAGAGAGAAATCATTTTGGTAAACTAAGAGAACGCAAATTTATATGCGAAAATTGTGGCAAAGCTTTCTACACCAAAACTGATGTGGGTGTCCATATGCGCACTCATACTGGTGAAACACCATATGCTTGCAGCATATGCCCATCAAAATTTACCCAAAGCAGTGCCATGCTGCGTCACCTCAAAACACATTCTTCAGAGAAGTCTCATGGATGCCCAACCTGTGGAAAAATGTTTGGTACTAAGGAGAAACTTAAAAGTCATCTAAAAACACATACAACCGAGAAACAGTACAGTTGTCCACTGTGCAACTCgctgtttaaatataaaagtaatctAAAGAAACATTTAAGATTACATGCTGAGCCTAATAGATTTGTTTGCAATTACTGCGGCCGCACTTTTAACGTAAAAGGCAATTTAAAATTGCATATAAACTCGCAGCATTCTGAAAAGTCTGGGTTTTGTAGTATTTGTGCCAAAAATGTATCAAACATGGACACTCACATGTGGAGGCATACTGGCGAAAGGCCTTTGAAATGTGAGCTTTGTACGGGTAGCTTTTACGAATTGAAAGCTTTGGCACATCATATGAACTTTAGGCATAAGAACACTGATAAGTTTAAGTGCCCAGTAGAAGGCTGCGCAATGACGTTTCCTTCAAGACCGATGCTTGCATTCCATAATGCTAAGCTCCATGACACGCAGATCCCATTCCCTTGTGATAGATGCTCTAGAGGCTTCTATAGAAAAAATGATCTTGCTAGGCATAAGATAGGAACACATAAGGAAAGACTGACTTAA
- Protein Sequence
- MDKNICRLCCENVGTCYIFSNDNGVSIYSKMLCCCVKVKICEGDGLPTHVCGPCETELTASYNFVLKCEASDQILRCRADEIEDSNKLDCKLKIEVKQEDCEDNHHHYEDAEEPSDGYAYLKLNNVKEEEKPKRAYKKRARLKGGSNCKCKECGRVCASQSALVIHSRVHTGERPFQCRSCDKKYADQGGLKRHIERNHFGKLRERKFICENCGKAFYTKTDVGVHMRTHTGETPYACSICPSKFTQSSAMLRHLKTHSSEKSHGCPTCGKMFGTKEKLKSHLKTHTTEKQYSCPLCNSLFKYKSNLKKHLRLHAEPNRFVCNYCGRTFNVKGNLKLHINSQHSEKSGFCSICAKNVSNMDTHMWRHTGERPLKCELCTGSFYELKALAHHMNFRHKNTDKFKCPVEGCAMTFPSRPMLAFHNAKLHDTQIPFPCDRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463832;
- 90% Identity
- iTF_00010426;
- 80% Identity
- iTF_00010426;