Ahol026636.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- Sall1
- Assembly
- GCA_949316455.1
- Location
- OX438776.1:18765524-18766912[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00085 19 6.7 0.1 21 51 173 203 166 204 0.86 2 7 0.00024 5.2 8.5 0.1 21 45 233 257 228 265 0.89 3 7 0.027 6.1e+02 1.9 0.0 20 45 260 285 257 292 0.86 4 7 3.5e-05 0.77 11.2 0.1 22 47 290 315 286 319 0.87 5 7 0.12 2.7e+03 -0.1 0.0 18 31 342 355 334 370 0.74 6 7 0.0022 50 5.4 0.3 18 48 367 397 354 401 0.91 7 7 0.89 2e+04 -2.9 0.1 4 16 448 460 445 460 0.79
Sequence Information
- Coding Sequence
- ATGGATAAGAATATTTGCCGGTTGTGCTGCAAAAATGTAGGGACCTATTATATATTTAGCAATAACAATGGCGTGTCAATTTACGCAAAAATGCTCTGTTGCTgcgttaaagtaaaaatttgcGAAGGCGATGGGCTACCAACTCACGTTTGTGGACCTTGCGAGGCTGAACTAACAGCATCCTATAACTTCGTGCTGAAGTGCGAAGCAACCGACCAAATTCTACGCTGTAAAGCTGAAAAAAGTGCAGATTCTAACAAACTTGATTGTAAATTGAAGATCGAAGTTAAACAAGAAGACTGCGACtacaaccaccaccaccaccactacgAAGATGCTGAGAAAACGAGTGAAGCTTACGCATATCTGGATTTTAGTTATGTTAAAGAGGAGAAACCCAAACGCCCTTATAAGAAGCGAGCGCGGTTTAAAGGTAGGAGTAATTGCAAGTGTAAAGAGTGCGGGCGCGTATGTGCGAGCCAGTCGGCTCTAGTGATACACAGCCGCGTGCACACGGGGGAGCGACCGTTCCAGTGCCGCTCTTGTGACAAAAAGTATGCTGATCAGGGTGGCTTAAAGCGACACATAGAAAGAAATCATTTTGGCAAACTAAGAGAACGCAAGTTTATATGCGAAAATTGCGGCAAAGGTTTCTACACCAAAACTGATGTGGGTGTCCATATGCGCACTCATACAGGTGAAACACCGTATGCATGCAGCATATGCCCCTCAAAATTTACCCAAAGCAGTGCCATGCTTCGTCACCTCAAAACACATTCTTCAGAGAAGTCTCATGGATGCCCGACCTGTGGAAAAATGTTtggtacaaaagaaaaacttaaaagtcatctaaaaacACATACAACAGAGAAACAGTACAGTTGTCCACTGTGCAACTcactgtttaaatataaaaataatctcAAGAAACATTTAAGATTACATGCGGAGCCAAACAGATTTGTTTGCAATTACTGTGGTCGCACTTTTAATGTAAAAGGCAATTTGAAATTGCATATAAGCTCGCAACATTCCGAAAAGTCTGGGTTTTGCAATATTTGTGCCAAAAATGTATCTAACATGGACACTCATATGTGGAGGCATACTGGAGAAAGGCCTTTAAAATGTGAGCTTTGTACGAGTAGCTTTTATGAATTGAAAGCTTTGGCACATCATATGAACTTTAGGCACAAGAACACTGATAAGTTTAAGTGCCAAGTAGAAGGCTGCACAATGACATTTCCATCAAGACCAATGCTTGCATTTCATAATGCTAAGCTCCATGAAACGCAGATTCCATTTCCTTGTAATAGATGCTCTAGAGGCTTCTATAGGAAAAATGATCTTGCTAGGCATAAGATAGGAACACATAAGGAAAGACTGACTTAA
- Protein Sequence
- MDKNICRLCCKNVGTYYIFSNNNGVSIYAKMLCCCVKVKICEGDGLPTHVCGPCEAELTASYNFVLKCEATDQILRCKAEKSADSNKLDCKLKIEVKQEDCDYNHHHHHYEDAEKTSEAYAYLDFSYVKEEKPKRPYKKRARFKGRSNCKCKECGRVCASQSALVIHSRVHTGERPFQCRSCDKKYADQGGLKRHIERNHFGKLRERKFICENCGKGFYTKTDVGVHMRTHTGETPYACSICPSKFTQSSAMLRHLKTHSSEKSHGCPTCGKMFGTKEKLKSHLKTHTTEKQYSCPLCNSLFKYKNNLKKHLRLHAEPNRFVCNYCGRTFNVKGNLKLHISSQHSEKSGFCNICAKNVSNMDTHMWRHTGERPLKCELCTSSFYELKALAHHMNFRHKNTDKFKCQVEGCTMTFPSRPMLAFHNAKLHETQIPFPCNRCSRGFYRKNDLARHKIGTHKERLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01463832;
- 90% Identity
- iTF_00010426;
- 80% Identity
- iTF_00009345;