Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010736.1:108102601-108115466[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.8e-06 0.0011 20.3 1.8 1 23 342 364 342 364 0.97

2 18 6.1e-06 0.00079 20.8 0.2 1 23 370 392 370 392 0.97

3 18 0.00022 0.028 15.9 0.3 1 23 398 420 398 420 0.98

4 18 9.3e-07 0.00012 23.4 3.6 1 23 426 448 426 448 0.98

5 18 4.2e-05 0.0054 18.2 4.7 1 23 454 476 454 476 0.99

6 18 7e-06 0.00091 20.6 3.5 1 23 482 504 482 504 0.97

7 18 5.1e-07 6.6e-05 24.2 5.0 1 23 510 532 510 532 0.98

8 18 1.5e-07 2e-05 25.9 2.5 1 23 538 560 538 560 0.97

9 18 7.8e-05 0.01 17.3 6.7 1 23 566 588 566 588 0.97

10 18 3e-06 0.00039 21.8 5.9 1 23 594 616 594 616 0.98

11 18 1.1e-07 1.4e-05 26.3 3.1 1 23 622 644 622 644 0.98

12 18 6.7e-06 0.00086 20.7 7.7 1 23 650 672 650 672 0.98

13 18 3.6e-06 0.00047 21.5 6.7 1 23 678 700 678 700 0.98

14 18 3.7e-05 0.0048 18.4 5.9 1 23 706 728 706 728 0.97

15 18 3.8e-05 0.005 18.3 5.0 3 23 736 757 735 757 0.96

16 18 5.5e-05 0.0072 17.8 0.5 1 23 763 785 763 785 0.98

17 18 0.0087 1.1 10.9 3.9 1 23 795 817 795 817 0.98

18 18 7e-07 9e-05 23.8 3.5 1 23 823 845 823 845 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.8e-06	0.0011	20.3	1.8	1	23	342	364	342	364	0.97
2	18	6.1e-06	0.00079	20.8	0.2	1	23	370	392	370	392	0.97
3	18	0.00022	0.028	15.9	0.3	1	23	398	420	398	420	0.98
4	18	9.3e-07	0.00012	23.4	3.6	1	23	426	448	426	448	0.98
5	18	4.2e-05	0.0054	18.2	4.7	1	23	454	476	454	476	0.99
6	18	7e-06	0.00091	20.6	3.5	1	23	482	504	482	504	0.97
7	18	5.1e-07	6.6e-05	24.2	5.0	1	23	510	532	510	532	0.98
8	18	1.5e-07	2e-05	25.9	2.5	1	23	538	560	538	560	0.97
9	18	7.8e-05	0.01	17.3	6.7	1	23	566	588	566	588	0.97
10	18	3e-06	0.00039	21.8	5.9	1	23	594	616	594	616	0.98
11	18	1.1e-07	1.4e-05	26.3	3.1	1	23	622	644	622	644	0.98
12	18	6.7e-06	0.00086	20.7	7.7	1	23	650	672	650	672	0.98
13	18	3.6e-06	0.00047	21.5	6.7	1	23	678	700	678	700	0.98
14	18	3.7e-05	0.0048	18.4	5.9	1	23	706	728	706	728	0.97
15	18	3.8e-05	0.005	18.3	5.0	3	23	736	757	735	757	0.96
16	18	5.5e-05	0.0072	17.8	0.5	1	23	763	785	763	785	0.98
17	18	0.0087	1.1	10.9	3.9	1	23	795	817	795	817	0.98
18	18	7e-07	9e-05	23.8	3.5	1	23	823	845	823	845	0.97

Sequence Information

Coding Sequence: atgaattCGGAAAATTTACAATCGGAAGAGAATAATTCGCAGCTCGGAAATCAggAAGTGTTATCAACAATAACTCCGGATGCATCTATGATTTTGGGGACAAGTCCACATTCCCTGCCAATATCATTGCCGTCAGGATCAACATTGAATATACCGTCATCGGTCGATTCTACACCAACTCAAcagtcaaatttaaatttaacaccctCACTTCATAGTAACTTGATTGGCAATGATAACCATTCTAGTGCATTGCAGTTGCATCCACCACCAACACAGCAACAAATGCAAATTGGTCAGGATGGATTAATTATGGATGTGCGGCAAGCACCAAAGGAGTTAAAAGTATTTGAATCACCACAGTTAGAACATTTTCAACATCAacagcaacagcagcagcaacaacagcagcaacatCAATCTCAACAACATCAACCACAGCTATCACCGCCGAGGCATCGACAAGAAAATCATTCTGTTGACCATACAATTAATAACTCCGAATCAATTCATTTATCGCAAAATATGAACGCCGAGATTCGAAACAATCAACCAATGCTAAATGTTAAAGATCCCACCAAGTTGCAAAATTCAAAAGTTAATCTTCAAAGTGGGCAACATCCGTTTTCAGATCAGCGAAGCGATTTgaaatcaaattcaaatcaatCACAATTAATGGATGGCAGAGCAGCTGATGGTTCTATGGTTAAAATACCTGCTGGTATTCAAGAACAAGATTTAACAATGTACAAAGTAAATATTGacgatttaaatcaatttttgacaTGTCACgaaatttttggaaaactacCCAATGATATGATAGCTATGCCTACTGCTGGAATGTCGACTAATCCTACAAGTAGTGTTAGTACAAGTACTACAACATCAACGATCACCGATAGTCATCGAGATGATGGCTGCGGGATATTGCCAAAAGAAGAAAATAGTATGGGACAAGCGGGATCAGTTTCGGGAAGTGGAATGAATGAAGATTCCAAAGGTCAACTTTCACAATCTGTGCATTCATGTGAtatttgtggaaaaatgtttcCATTTCGTTACCAATTAATCGTACACAGACGTTACCATAATGAAAGAAAACCATTTATATGTCAAGTGTGTGGTCAAGCATTCAACACATCTGATGAGTTGACAAAACATGGAAAAGTCCATCTTGGTGGATCAATGTTTATATGTACTGTTTGCTTTAATGTTTTTGCTAACGATGCTAGTCTGGAACGACATATGAAACGACATTCGGCTGACAAGCCGTTCTCGTGCACAATATGTCAAAAAACGTTTGCACGCAAAGAACATCTTGAAAATCATACACGAAGTCATACAGGTGAAACACCATTTCGTTGTCAATATTGTGCTAAAACTTTTACACGTAAAGAACATATGGTAAATCACGTGCGTAAGCATACCGGTGAGACTCCATTTCGTTGTGatatttgtaaaaaatcatTTACCAGAAAGGAACATTATATGAATCATGTTATGTGGCACACTGGAGAAACACCTCATCAATGTACAGTTTGTGGAAAGAAATATACACGAAAAGAACATTTGGCAAATCACATGAGATCGCATACGAATGAGACACCTTTCCGTTGTGAGATTTGTGGAAAGTCGTTTACCAGAAAAGAACATTTTACCAATCACATTCTATGGCACACTGGTGAGACACCTCATCGATGTGATTTTTGTTCGAAAACTTTTACTCGAAAGGAGCATCTTTTAAATCATGTACGACAGCATACTGGAGAATCACCTCATCGATGTGAATATTGTTCAAAGTCATTTACCCGTAAAGAGCATCTCGTTAATCATATCAGACAACACACAGGTGAAACACCATTTAAATGTACATACTGTCCAAAGGCATTCACACGGAAAGATCATTTGGTGAATCACATTCGTCAACATACTGGTGAATCGCCCCATAAatgtacatattgttcaaaatcatTCACACGAAAGGAACATTTAACCAATCATGTACGACAACATACTGGTGAACTTCCTCATCGTTGTCAATACTGTTCAAAATCGTTTACACGAAAAGAACATTTGACAAATCATGTCCGAATCCATACAGGAGATTCGCCACATCGATGCGATTTCTGCCAAAAAACATTCACCCGCAAAGAGTATTTAACAAATCATTTGAAACAGCATAGTCAGGATAATCCAAACTGTTGTAATATATGTTCAAAACCGTTTACACGAAAGGAACATTTAATAAACCACATGAGCCGGTCACATACTGGCGAACGCCCATTCTCCTGTGATGAATGTGGAAAATCATTTCCACTAAAAGGAAATTTATTATTCCATCAGCGAAGCCATAACAAGGGAAGTGCAGCTGAACGACCATTTCGTTGTGATTTATGTCCAAAGGATTTCATATGTAAAGgACATTTGGTTTCACATCGAAGATCACACTCGGACGAGAGGCCACATATATGCGAACACTGTGGCAAAACTTTTGTTGAGAAAGGTAACCTATTACGTCACATGAAAAAGCACGCACTGGATACAGCTTATGTTCAAATTCCGAAATTGGAACCagGTACTCAATTTGCAGGACCAAAAGTGGAACCAGGTACACAATTTCCGAATTTATCTGATGCAATTTCTACAGTAGTAACATCAATGGAAACTGTGTCCAACAACACAGATGCTATAATCACATCAAATGCGTCATTGTCGAATAATTACAATCCAGcagataataaaatttcgaattcGCAACAACCCGTTTCAATAATTACACATTCTCAGAATCATCAAATGAGTTCTTCAAATAATGCGAATCGTCCAAGTGATCCACTACAAATGCACCATTTAAATGCATCCCAGGAACACCATGTTGTGTATTAA
Protein Sequence: MNSENLQSEENNSQLGNQEVLSTITPDASMILGTSPHSLPISLPSGSTLNIPSSVDSTPTQQSNLNLTPSLHSNLIGNDNHSSALQLHPPPTQQQMQIGQDGLIMDVRQAPKELKVFESPQLEHFQHQQQQQQQQQQQHQSQQHQPQLSPPRHRQENHSVDHTINNSESIHLSQNMNAEIRNNQPMLNVKDPTKLQNSKVNLQSGQHPFSDQRSDLKSNSNQSQLMDGRAADGSMVKIPAGIQEQDLTMYKVNIDDLNQFLTCHEIFGKLPNDMIAMPTAGMSTNPTSSVSTSTTTSTITDSHRDDGCGILPKEENSMGQAGSVSGSGMNEDSKGQLSQSVHSCDICGKMFPFRYQLIVHRRYHNERKPFICQVCGQAFNTSDELTKHGKVHLGGSMFICTVCFNVFANDASLERHMKRHSADKPFSCTICQKTFARKEHLENHTRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPFRCDICKKSFTRKEHYMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGELPHRCQYCSKSFTRKEHLTNHVRIHTGDSPHRCDFCQKTFTRKEYLTNHLKQHSQDNPNCCNICSKPFTRKEHLINHMSRSHTGERPFSCDECGKSFPLKGNLLFHQRSHNKGSAAERPFRCDLCPKDFICKGHLVSHRRSHSDERPHICEHCGKTFVEKGNLLRHMKKHALDTAYVQIPKLEPGTQFAGPKVEPGTQFPNLSDAISTVVTSMETVSNNTDAIITSNASLSNNYNPADNKISNSQQPVSIITHSQNHQMSSSNNANRPSDPLQMHHLNASQEHHVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01458833; iTF_01455050; iTF_01054579; iTF_01052483; iTF_01456654; iTF_01460467; iTF_01053655;
90% Identity: iTF_01458833;
80% Identity: -