Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744475.1:72060493-72076575[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.4e-06 0.0013 20.4 1.8 1 23 378 400 378 400 0.97

2 18 5.8e-06 0.00087 20.9 0.2 1 23 406 428 406 428 0.97

3 18 0.00021 0.032 16.0 0.3 1 23 434 456 434 456 0.98

4 18 9.4e-07 0.00014 23.4 3.4 1 23 462 484 462 484 0.98

5 18 4e-05 0.006 18.3 4.7 1 23 490 512 490 512 0.99

6 18 2.5e-05 0.0038 18.9 3.9 1 23 518 540 518 540 0.97

7 18 4.9e-07 7.3e-05 24.3 5.0 1 23 546 568 546 568 0.98

8 18 1.4e-07 2.2e-05 26.0 2.5 1 23 574 596 574 596 0.97

9 18 7.5e-05 0.011 17.4 6.7 1 23 602 624 602 624 0.97

10 18 2.9e-06 0.00043 21.9 5.9 1 23 630 652 630 652 0.98

11 18 1.1e-07 1.6e-05 26.4 3.1 1 23 658 680 658 680 0.98

12 18 6.4e-06 0.00095 20.8 7.7 1 23 686 708 686 708 0.98

13 18 3.5e-06 0.00052 21.6 6.7 1 23 714 736 714 736 0.98

14 18 3.6e-05 0.0053 18.4 5.9 1 23 742 764 742 764 0.97

15 18 3.7e-05 0.0055 18.4 5.0 3 23 772 793 771 793 0.96

16 18 5.3e-05 0.0079 17.9 0.5 1 23 799 821 799 821 0.98

17 18 0.0084 1.3 11.0 3.9 1 23 831 853 831 853 0.98

18 18 5.8e-07 8.6e-05 24.1 1.7 1 23 859 881 859 881 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.4e-06	0.0013	20.4	1.8	1	23	378	400	378	400	0.97
2	18	5.8e-06	0.00087	20.9	0.2	1	23	406	428	406	428	0.97
3	18	0.00021	0.032	16.0	0.3	1	23	434	456	434	456	0.98
4	18	9.4e-07	0.00014	23.4	3.4	1	23	462	484	462	484	0.98
5	18	4e-05	0.006	18.3	4.7	1	23	490	512	490	512	0.99
6	18	2.5e-05	0.0038	18.9	3.9	1	23	518	540	518	540	0.97
7	18	4.9e-07	7.3e-05	24.3	5.0	1	23	546	568	546	568	0.98
8	18	1.4e-07	2.2e-05	26.0	2.5	1	23	574	596	574	596	0.97
9	18	7.5e-05	0.011	17.4	6.7	1	23	602	624	602	624	0.97
10	18	2.9e-06	0.00043	21.9	5.9	1	23	630	652	630	652	0.98
11	18	1.1e-07	1.6e-05	26.4	3.1	1	23	658	680	658	680	0.98
12	18	6.4e-06	0.00095	20.8	7.7	1	23	686	708	686	708	0.98
13	18	3.5e-06	0.00052	21.6	6.7	1	23	714	736	714	736	0.98
14	18	3.6e-05	0.0053	18.4	5.9	1	23	742	764	742	764	0.97
15	18	3.7e-05	0.0055	18.4	5.0	3	23	772	793	771	793	0.96
16	18	5.3e-05	0.0079	17.9	0.5	1	23	799	821	799	821	0.98
17	18	0.0084	1.3	11.0	3.9	1	23	831	853	831	853	0.98
18	18	5.8e-07	8.6e-05	24.1	1.7	1	23	859	881	859	881	0.97

Sequence Information

Coding Sequence: ATGAATACAGATAATTTACAATCGGAGGAGAATAATTCACAGCTTGGAAGTCAGCAGCAGCAAGAAAATTCTATTATTCGTCAAGGATCTTCCACTTCTGCTGCGACAACAATTAATGACactaatagtagtagtagtagtacaCAATCTCCTGATATTCGTATCAATCCTTTGACCCTACCATCAGCTATTTCGCCGgaagTTTTATCGACTATAACTCCCGATGCGTCTATGATTTTGGGTACAAGTCCTCATTCATTACCAATTTCATTAGCGTCCGGATCAGCATTAAATATATCATCGTCGGTTGATTCTACGGCATCGCagcaatcaaatttaaatttaacatcatcacttcatagtaatttaattgGTAATAATAATCATCCGGGGTCATTGCAATTACATTCGCCACAAACACAGCAGCAAATGCAAATGGGTCAAGATGGTTTAATGATGAATGTGCGTCAACCACCAAAAGAGTTAAAAGTATTTGAATCAAATCAATTGGATCATTtccaacatcaacaacaacatcaatcacagcaacaacaacaacaattatcaCCTCCAAGGCATCGACAAGATAATCGCTCTGATGatcatacaataaataattctgATTCGCATCATTTACCACAAACCATGAACCCTGCAGAAAATCGGAATAATGAACCAATGCTTAATATGAAAGATACCAAGTTACAtaacacaaaactaaatttacaacaacaacaattttccGATCAACAAAACGATTTAAAACCAAATCCATCACAATTAATGGATGTTCGATCATCTGATGGTTCTATCGTAAAAATACCGTCAGGTATTCAAGAACAAGATTTAACAATGTACAAAGTAAATATtgatgatttaaatcaatttttaacatgtcatgaaatttttggtaaattaccTAATGACATGTTAGCAATGCCCACTGCTGGAATGTCTACAAATCCTGTAAGTAGTGTGACCACGAGTACAACAACATCGACGATTACGGACAGTCATCGCGACAATGGATGTGAAATTGCGccaaaagaagaaaataatatgGGACAGGGGGGATCAGCTTCGGGAAGTGGTTTGAATGAAGATTCAAAAACTCAACTTTCACAAGCCGTACATTCATGTGATATTTGTGGAAAAATGTTTCCATTTCGTTACCAATTAATCGTACACCGACGTTACCATAATGAGAGAAAACCATTTATATGTCAAGTGTGTGGCCAAGCGTTTAATACGTCCGACGAATTAACAAAACATGGGAAGGTTCATCTCGGTGGCTCAATGTTTATATGTACTGTTTGCTTTAATGTTTTTGCTAATGATGCTAGTCTTGAACGACATATGAAACGACATTCGGCTGATAAACCATTTTCATGTTCGATATGTCAAAAAACGTTTGCGCGAAAAGAACATCTTGAAAATCATACACGAAGTCATACGGGTGAAACCCCGTTTCGATGTCAGTACTGTGCTAAAACGTTTACACGTAAAGAGCATATGGTAAATCATGTGCGAAAGCATACGGGCGAGACCCCGTTTCGATGTGATCTttgtaaaaaatcatttacgcGAAAAGAGCATTATATGAATCATGTAATGTGGCATACTGGTGAAACACCACATCAATGTACTGTTTGTGGCAAAAAATATACGCGAAAAGAACATTTGGCCAATCATATGAGATCACACACAAACGAGACACCATTTCGATGTGAAATTTGCGGAAAATCATTTACTAGAAAAGAACATTTCACTAATCATATATTATGGCACACGGGTGAGACGCCACATCGCTgtgatttttgttcaaaaacatTTACACGAAAGGAACATCTTTTAAATCATGTCCGACAACATACTGGTGAATCTCCGCATCGTTGTGAATACTGTTCCAAGTCGTTTACAAGGAAAGAACACCTCGTCAATCATATCAGACAACATACAGGCGAGACACCATTTAAATGTACCTACTGTCCAAAAGCTTTTACACGTAAGGATCATTTGGTAAATCATATTCGTCAACATACCGGTGAATCGCCTCATAAATGCACGTACTGTTCAAAATCGTTTACACGAAAAGAACATCTAACCAATCATGTGCGACAACATACGGGAGAGCTTCCACATCGTTGTCAGTATTGTTCGAAATCGTTTACACGGAAAGAACATTTAACAAATCATGTTCGAATTCATACCGGCGATTCACCACATCGTTGCGATTTCTGCCAAAAAACATTTACCCGCAAAGaatatttaacaaatcatttgaaGCAGCATAGCCAGGataatccaaattgttgtaatatttgttcAAAACCGTTTACACGCAAGgaacatttaataaatcatatgAGTCGATCGCATACCGGAGAACGTCCATTCTCATGTGATGAATGTGGAAAATCATTTCCACTAAAAGGCAATCTACTATTTCACCAGCGAAGTCATAATAAAGGAAGTGCAGCTGAACGACCATTTCGTTGTGATTTATGTCCTAAGGATTTTATATGTAAAGGACATTTGGTTTCACATCGAAGGTCACACTCGGACGAAAGGCCACATATATGTGAAAATTGCGGCAAAACTTTTGTCGAAAAAGGAAATCTGTTACGTCATATGAAAAAACATGTGCAGGATGGAACGTATGCTCAAATTCCAAAATTAGAGCcaggtACACAATTTGCAGGTCCAAAATTGGAACCAGGTGAGTAA
Protein Sequence: MNTDNLQSEENNSQLGSQQQQENSIIRQGSSTSAATTINDTNSSSSSTQSPDIRINPLTLPSAISPEVLSTITPDASMILGTSPHSLPISLASGSALNISSSVDSTASQQSNLNLTSSLHSNLIGNNNHPGSLQLHSPQTQQQMQMGQDGLMMNVRQPPKELKVFESNQLDHFQHQQQHQSQQQQQQLSPPRHRQDNRSDDHTINNSDSHHLPQTMNPAENRNNEPMLNMKDTKLHNTKLNLQQQQFSDQQNDLKPNPSQLMDVRSSDGSIVKIPSGIQEQDLTMYKVNIDDLNQFLTCHEIFGKLPNDMLAMPTAGMSTNPVSSVTTSTTTSTITDSHRDNGCEIAPKEENNMGQGGSASGSGLNEDSKTQLSQAVHSCDICGKMFPFRYQLIVHRRYHNERKPFICQVCGQAFNTSDELTKHGKVHLGGSMFICTVCFNVFANDASLERHMKRHSADKPFSCSICQKTFARKEHLENHTRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPFRCDLCKKSFTRKEHYMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGELPHRCQYCSKSFTRKEHLTNHVRIHTGDSPHRCDFCQKTFTRKEYLTNHLKQHSQDNPNCCNICSKPFTRKEHLINHMSRSHTGERPFSCDECGKSFPLKGNLLFHQRSHNKGSAAERPFRCDLCPKDFICKGHLVSHRRSHSDERPHICENCGKTFVEKGNLLRHMKKHVQDGTYAQIPKLEPGTQFAGPKLEPGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457737;
90% Identity: -
80% Identity: -