Basic Information

Insect: Nephrotoma flavescens
Gene Symbol: -
Assembly: GCA_932525705.1
Location: CAKOBH010000975.1:335074-354471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2e-05 0.0036 19.4 1.8 1 23 450 472 450 472 0.97

2 18 7.8e-06 0.0014 20.7 0.2 1 23 478 500 478 500 0.97

3 18 0.00028 0.051 15.8 0.3 1 23 506 528 506 528 0.98

4 18 2e-06 0.00037 22.5 2.5 1 23 534 556 534 556 0.98

5 18 5.4e-05 0.0097 18.0 4.7 1 23 562 584 562 584 0.99

6 18 9e-06 0.0016 20.5 3.5 1 23 590 612 590 612 0.97

7 18 6.6e-07 0.00012 24.0 5.0 1 23 618 640 618 640 0.98

8 18 1.9e-07 3.5e-05 25.7 2.5 1 23 646 668 646 668 0.97

9 18 0.0001 0.018 17.2 6.7 1 23 674 696 674 696 0.97

10 18 2e-05 0.0036 19.4 6.1 1 23 702 724 702 724 0.98

11 18 1.4e-07 2.6e-05 26.1 3.1 1 23 730 752 730 752 0.98

12 18 8.5e-06 0.0015 20.5 7.7 1 23 758 780 758 780 0.98

13 18 7.2e-06 0.0013 20.8 5.6 1 23 786 808 786 808 0.98

14 18 4.8e-05 0.0086 18.2 5.9 1 23 814 836 814 836 0.97

15 18 4.9e-05 0.0089 18.1 5.0 3 23 844 865 843 865 0.96

16 18 7.1e-05 0.013 17.6 0.5 1 23 871 893 871 893 0.98

17 18 0.011 2 10.7 3.9 1 23 903 925 903 925 0.98

18 18 6.2e-07 0.00011 24.1 1.6 1 23 931 953 931 953 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2e-05	0.0036	19.4	1.8	1	23	450	472	450	472	0.97
2	18	7.8e-06	0.0014	20.7	0.2	1	23	478	500	478	500	0.97
3	18	0.00028	0.051	15.8	0.3	1	23	506	528	506	528	0.98
4	18	2e-06	0.00037	22.5	2.5	1	23	534	556	534	556	0.98
5	18	5.4e-05	0.0097	18.0	4.7	1	23	562	584	562	584	0.99
6	18	9e-06	0.0016	20.5	3.5	1	23	590	612	590	612	0.97
7	18	6.6e-07	0.00012	24.0	5.0	1	23	618	640	618	640	0.98
8	18	1.9e-07	3.5e-05	25.7	2.5	1	23	646	668	646	668	0.97
9	18	0.0001	0.018	17.2	6.7	1	23	674	696	674	696	0.97
10	18	2e-05	0.0036	19.4	6.1	1	23	702	724	702	724	0.98
11	18	1.4e-07	2.6e-05	26.1	3.1	1	23	730	752	730	752	0.98
12	18	8.5e-06	0.0015	20.5	7.7	1	23	758	780	758	780	0.98
13	18	7.2e-06	0.0013	20.8	5.6	1	23	786	808	786	808	0.98
14	18	4.8e-05	0.0086	18.2	5.9	1	23	814	836	814	836	0.97
15	18	4.9e-05	0.0089	18.1	5.0	3	23	844	865	843	865	0.96
16	18	7.1e-05	0.013	17.6	0.5	1	23	871	893	871	893	0.98
17	18	0.011	2	10.7	3.9	1	23	903	925	903	925	0.98
18	18	6.2e-07	0.00011	24.1	1.6	1	23	931	953	931	953	0.97

Sequence Information

Coding Sequence: ATGCGATATTTCAAAACGCGATACAGTACAAAACGCGATATGGTACAAAACGCGATATTTCAAAATGCGATATTTCAAAACGCTATATGGTACAAAACGCGATATGGTACAAAACACGATATTTCAAAACGCGATATTTCAAAACACGATATGTTCAATGGTAAATACTTTTTATTCCAAAACATCAACATAAGTCTTGGTCCCTGTGTTTATAATTTACCTCGCTTTGATGGGCCTAAGCCAAGTCAGGAAGTTTTATCAACTATAACACCAGATGCATCCATGATTTTGGGTACTAGTCCACATTCTTTACCTACACTACCTTCCGGATCTGCATTAAATATGCCATCTTCAGTGAATTCAACAGCCCCACACCAATCAAACCTAAATTTGACATCATCACTTCATAGTGGTTTGATCGGTAATGATACACATCCCAGTGCATTACATTTACATCCCCCACCACCTCAGCAACATATGCCACTAGGTCCACCCGATGGTATAGTTATGGATGTCCGACAAACCCCAAAGGAATTAAAAGTATTTGAGgcatcacatttggatcattttcaacatcaacagcaacaacagcagcagcaacagcagcaacaacagcagcagcaacagcagcaacaacaacagcagcagcagcagcagcaacagcagcagcaacagcagcaacaacagcagcagcaacagcagcagcaacaacaacagcaacaacatcaacatcaatctcaaccaccatcacaacagcaacaatcacagttatcaccctcaagacatcgacaagatgtaaaccgccctgtggaccatTCAATAAGTAATTCCGATTCACATCATGTACCTCACACCATAAACTCCGAAATCCGAAATAGTAATGAACCTAATCTGAAAGATGCGAAATTACATAATTCTAAATTAAATATACAAAGTCTACACCATCAATTTTCCGATCAGCAAAACGATTTAAAATCGAATTCAAACCCATCCCAGTTAATGGATGTCAGAACTGCTGACGGTTCGATTGTTAAAATTGCATCCGGTATTCAAGAGCAAGATTTGACAATGTACAAAGTAAATATTGATGATCTAAATCAATTTTTAACGTGTCACGAAATTTTTGGTAAATTGCCTAACGATATGTTGGCTATGCCTACGGCTGGAATGTCTACTAATCCAACAAGCAGTGTAAACACGAGTACCACAACATCCACAGTTACCGATAGCCACAGAAATGATTTATGTGCAATTTCACCTAAAGAAGAAAATAGCATTGGACATGACGGATCAGCTTCAGGAAGTGGAATGAATGAAGATTCAAAAGCTCAGCTTTCACAAGCCGTGCACTCATGTGATGTTTGTGGAAAAATGTTCCCCTTTCGTTACCAATTAATAGTACACAGACGTTACCATAATGAGAGAAAACCATTTATATGTCAAGTGTGTGGTCAAGCGTTCAACACATCTGACGAGCTAACAAAGCACGGAAAAGTTCATCTTGGTGGCTCAATGTTTATATGTACTGTTTGCTTTAATGTATTTGCTAATGATGCTAGTCTTGAACGACATATGAAACGacattcggctgataaaccattctcgtgcgcgatatgccaaaaaacatttgcgcgtaaagaacatctcgaaaatcacactcgaagtcatacaggtgaaacaccatttagatgtcagtattgtgctaaaacatttacgcgtaaagagcatatggtaaatcatgtccgaaagcatacgggagaaactccgtttcgttgtgatatctgtaaaaaatcatttactagaaaggagcattacatgaatcatgttatgtggcatactggtgaaacacctcaccaatgcaccgtttgtggaaagaaatatacaagaaaagaacatttggctaatcatatgagatcgcacacgaatgaaacaccatttcgctgtgaaatttgcggaaagtcatttactagaaaagagcattttaccaatcacatattatggcatacgggtgaaactccgcatcgctgtgatttttgttcaaaaacatttactcgcaaggaacatctcttaaaccacgtacgacaacatactggggaatctccgcatcggtgtgaattttgttcaaagtcatttacacggaaagaacacctcgttaatcatatcaggcagcacacaggtgaaactccatttaaatgtacctactgtccaaaggcattcacacggaaggatcacttagtgaatcatatccgccaacatacaggtgaatcaccccacaaatgcacatattgttccaaatcgtttacaagaaaggaacatttaaccaatcatgtgcggcaacataccggagaacttccacatcgttgtcaatactgtgcgagatctttcactcgaaaggagcatttaaccaaccatatccgaattcatactggagattcgccacatcgttgcgatttctgtcaaaaaacgtttactcgcaaagaatatttaacaaatcatttgaaacaacacagccaggataatccaaactgttgtaatatatgttcaaaaccttttacacgaaaggaacatttaataaatcacatgagtcgatcgcatactggtgagcgtcccttttcctgcgatgaatgtggaaaatcatttccattgaaAGGCAATCTGTTATTTCACCAGAGGAGTCATAATAAAGGAAGTACAGCTGAACGACCTTTTCGTTGTGATTTATGTCCAAAGGATTTCATCTGTAAAGGACATTTGGTGTCACATCGAAGATCACACTCCGATGAAAGGCCACATATATGTGAGCAGTGTGGTAAATCTTTTGTAGAAAAAGGTAACCTATTGCGTCATATGAAAAAGCATGCACTGGATACAGCCTATACACAAATTCCTAAATTGGAGCCAGGAACACAGTTTGCAGCGCCAAAAGTGGAACCGGCAGGTACACAATTTTCAGGCTTATCTGAGGGAATTTCTACGGCTGTCACTTCAATGGAAACTCCATCAAATAACACCGATGCTATAATTACATCAAATGCATCCTTGTCAAATAACTACAATCCACTAGATAATAAAATTTCAAATTCGCAGCAACAACCCGTTTCTATAATTTCCCATTCTCAGGATCATCAAATGAGTTCATCGAATGATACGAATCGAACAGGCGGTCCACTACAAATGCATCATTTAAATGCACCACAGGAACACCATGTTGTATATTAA
Protein Sequence: MRYFKTRYSTKRDMVQNAIFQNAIFQNAIWYKTRYGTKHDISKRDISKHDMFNGKYFLFQNINISLGPCVYNLPRFDGPKPSQEVLSTITPDASMILGTSPHSLPTLPSGSALNMPSSVNSTAPHQSNLNLTSSLHSGLIGNDTHPSALHLHPPPPQQHMPLGPPDGIVMDVRQTPKELKVFEASHLDHFQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHQSQPPSQQQQSQLSPSRHRQDVNRPVDHSISNSDSHHVPHTINSEIRNSNEPNLKDAKLHNSKLNIQSLHHQFSDQQNDLKSNSNPSQLMDVRTADGSIVKIASGIQEQDLTMYKVNIDDLNQFLTCHEIFGKLPNDMLAMPTAGMSTNPTSSVNTSTTTSTVTDSHRNDLCAISPKEENSIGHDGSASGSGMNEDSKAQLSQAVHSCDVCGKMFPFRYQLIVHRRYHNERKPFICQVCGQAFNTSDELTKHGKVHLGGSMFICTVCFNVFANDASLERHMKRHSADKPFSCAICQKTFARKEHLENHTRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPFRCDICKKSFTRKEHYMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEFCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGELPHRCQYCARSFTRKEHLTNHIRIHTGDSPHRCDFCQKTFTRKEYLTNHLKQHSQDNPNCCNICSKPFTRKEHLINHMSRSHTGERPFSCDECGKSFPLKGNLLFHQRSHNKGSTAERPFRCDLCPKDFICKGHLVSHRRSHSDERPHICEQCGKSFVEKGNLLRHMKKHALDTAYTQIPKLEPGTQFAAPKVEPAGTQFSGLSEGISTAVTSMETPSNNTDAIITSNASLSNNYNPLDNKISNSQQQPVSIISHSQDHQMSSSNDTNRTGGPLQMHHLNAPQEHHVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457737;
90% Identity: iTF_01054579;
80% Identity: -