Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282558.1:185641261-185652259[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1e-05 0.006 20.3 1.8 1 23 385 407 385 407 0.97

2 18 7.5e-06 0.0042 20.8 0.2 1 23 413 435 413 435 0.97

3 18 0.00027 0.15 15.8 0.3 1 23 441 463 441 463 0.98

4 18 1.2e-06 0.00067 23.2 3.4 1 23 469 491 469 491 0.98

5 18 5.2e-05 0.029 18.1 4.7 1 23 497 519 497 519 0.99

6 18 8.7e-06 0.0048 20.6 3.5 1 23 525 547 525 547 0.97

7 18 6.3e-07 0.00035 24.1 5.0 1 23 553 575 553 575 0.98

8 18 1.9e-07 0.0001 25.8 2.5 1 23 581 603 581 603 0.97

9 18 9.7e-05 0.054 17.3 6.7 1 23 609 631 609 631 0.97

10 18 3.7e-06 0.0021 21.7 5.9 1 23 637 659 637 659 0.98

11 18 4.4e-07 0.00025 24.6 3.1 1 23 665 687 665 687 0.98

12 18 8.2e-06 0.0046 20.6 7.7 1 23 693 715 693 715 0.98

13 18 4.4e-06 0.0025 21.5 6.7 1 23 721 743 721 743 0.98

14 18 4.6e-05 0.025 18.3 5.9 1 23 749 771 749 771 0.97

15 18 4.7e-05 0.026 18.2 5.0 3 23 779 800 778 800 0.96

16 18 6.8e-05 0.038 17.7 0.5 1 23 806 828 806 828 0.98

17 18 0.011 6 10.8 3.9 1 23 838 860 838 860 0.98

18 18 8.6e-07 0.00048 23.7 3.5 1 23 866 888 866 888 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1e-05	0.006	20.3	1.8	1	23	385	407	385	407	0.97
2	18	7.5e-06	0.0042	20.8	0.2	1	23	413	435	413	435	0.97
3	18	0.00027	0.15	15.8	0.3	1	23	441	463	441	463	0.98
4	18	1.2e-06	0.00067	23.2	3.4	1	23	469	491	469	491	0.98
5	18	5.2e-05	0.029	18.1	4.7	1	23	497	519	497	519	0.99
6	18	8.7e-06	0.0048	20.6	3.5	1	23	525	547	525	547	0.97
7	18	6.3e-07	0.00035	24.1	5.0	1	23	553	575	553	575	0.98
8	18	1.9e-07	0.0001	25.8	2.5	1	23	581	603	581	603	0.97
9	18	9.7e-05	0.054	17.3	6.7	1	23	609	631	609	631	0.97
10	18	3.7e-06	0.0021	21.7	5.9	1	23	637	659	637	659	0.98
11	18	4.4e-07	0.00025	24.6	3.1	1	23	665	687	665	687	0.98
12	18	8.2e-06	0.0046	20.6	7.7	1	23	693	715	693	715	0.98
13	18	4.4e-06	0.0025	21.5	6.7	1	23	721	743	721	743	0.98
14	18	4.6e-05	0.025	18.3	5.9	1	23	749	771	749	771	0.97
15	18	4.7e-05	0.026	18.2	5.0	3	23	779	800	778	800	0.96
16	18	6.8e-05	0.038	17.7	0.5	1	23	806	828	806	828	0.98
17	18	0.011	6	10.8	3.9	1	23	838	860	838	860	0.98
18	18	8.6e-07	0.00048	23.7	3.5	1	23	866	888	866	888	0.97

Sequence Information

Coding Sequence: atgaattcggaAAATCTACAATCGGAAGAGAATAATTCGCAGCTAGGAAATCAGcaagaAAATTCTATTATTCGTCAAGGATCTTCCACTTCTACTTCGACAACAATTAATAACACTAGTAGCACACAATCTCCTGATATTCATATCAATCCTTTGACCCTATCATCTATTTCACCGGTACCGGAAGTTTTATCAACTATAACTCCGGATGCTTCTATGATTTTGGGCACCAGTCCACATTCGTTACCAATTTCATTACCATCTGGATCATCATTGAATAATATATCATCTTCGATGGATTCTACAGCGTCGatgcaatcaaatttaaatttgacatctCTTCACAGTAATTTGATCAATAATGATAATCATCCCAGTGCGCTACAGTTACATCCACCACCACCTCAGCAACAAATGCAAATGGGTCAGGATGGATTAATTATGGATGTAAGACAAGCACCAAAAGAATTGAAAGTGTTTGAATCATCACAGTTGGAACATTTTCAAcatcaacaacagcaacaacaacaacagcaccaGCATCAATCTCAACAAACACAACAACAGCAACCACAGCTATCATCTCCAAGCCATAGACAAGAAAATCGTGCTGTTGATCATTCAATGAATAATTCTGATTCGCTTCATTTGTCGCAACCCATGAGCTCTGATATTCGGAATAATGAACCAATGCTAAATGTAAAAGACACCAAGattcataactcaaaattaaatcttcaaaaTACACAACAATTTCCGGATCAGCAAAgtgatttaaaaccaaattcaaatcaatcacaATTAATGGATGTTAGAACAGCTGATGGTTCTATCGTTAAAATAGCTGCTGGAATTCAAGAACAAGATTTAACAATGTACAAAGTAAATATtgatgatttaaatcaatttttaacatgtcacgaaatttttggtaaattgccCAATGATATGTTGGCTATGCCTACTGCTGGAATGTCTACTAATCCTACAAGTAGTGTAAGCACGAGTACTACAACATCAACGATCACCGATAGTCATAGAAATGATGGATGTCCAATTTCgccaaaacaagaaaataacaTGGGACAAGGAGGATCAGCTTCGGGAAGTGGTTTAGATGAAGATTCTAAATCTCAACTTTCACAAGGTGTACATTCCTGTGATATATGTGGGAAAATGTTCCCATTCCGTTACCAATTAATCGTACACAGGCGTTACCATAATGAGAGAAAGCCGTTTATTTGTCAAGTGTGTGGCCAAGCGTTTAACACGTCTGATGAGTTAACAAAGCATGGGAAGGTACATCTCGGTGGCTCAATGTTTATATGTACTGTTTGCTTTAATGTTTTTGCTAATGATGCTAGTCTTGAACGACATATGAAACGACATTCGGCTGATAAACCATTTTCATGTTCGATTTGTCAAAAAACGTTTGCGCGCAAAGAACATCTTGAAAATCACACACGAAGTCATACAGGTGAAACACCATTTCGTTGCCAATATTGTGCTAAAACTTTCACACGTAAAGAACACATGGTAAATCACGTGCGAAAGCATACTGGAGAAACCCCATTTCGCTgtgatatttgtaaaaaatcatttactagaAAGGAACATTATATGAATCATGTGATGTGGCATACTGGTGAAACTCCCCATCAATGCACTGTTTGCGGAAAGAAATATACAAGAAAAGAACATTTGGCTAATCATATGAGATCACACACAAATGAGACACCATTCCGCTGTGAAATTTGTGGAAAGTCGTTTACTAGAAAAGAACATTTTACCAATCACATACTATGGCACACGGGTGAAACCCCTCATCGTTgtgatttttgttcaaaaacatTTACACGAAAGGAACATCTCTTAAATCATGTACGACAACATACTGGCGAATCTCCGCATCGGTGTGAATATTGTTCAAAGTCGTTTACACGGAAAGAACATCTCGTCAATCATATCAGACAACATACAGGCGAGACTCCATTTAAATGTACGTATTGTCCCAAGGCATTTACTCGAAAGGATCATTTGGTGAATCATGTCCGTCAACATACTGGTGAATCGCcacataaatgtacatattgttCCAAGTCTTTCACACGAAAGGAACATTTAACCAATCATGTGAGACAACATACAGGAGAGCTTCCTCATCGGTGTCAGTATTGTTCAAAATCTTTTACACGAAAAGAACATTTGACTAATCATGTCCGAATTCATACTGGAGATTCGCCTCACCGGTGTGATTTTTGCCAAAAAACTTTCACTCGCAAAGAATATTTGACAAACCATTTGAAACAGCATAGCCAAGACAATCCAAACTGTTGCAATATCTGCTCAAAACCTTTTACACGGAAGGAACATTTGATAAATCACATGAGCCGATCACACACTGGTGAGCGTCCATTTTCCTGTGATGAATGCGGAAAATCATTTCCATTAAAAGGAAACCTGTTATTTCATCAGAGGAGTCATAATAAAGGAAGTACAGCTGAAAGGCCATTTCGTTGTGATTTATGCCCAAAGGATTTTATATGTAAAGGACATCTGGTTTCACATCGAAGATCACACTCTGATGAAAGGCCGCATATATGTGAACATTGTGGCAAAACCTTTGTCGAAAAAGGTAATCTTTTAAGGCATATGAAAAAACATGTACTGGATACAGCTTATGCtcaaattccaaaattagaGCCAGgtACACAATTTGCAGGACCAAAAGTGGAACCAGGCACACAATTTCCGAATTTATCAGAAGCAATTTCTACAGTGGTAACGTCAATGGAAACTGTATCAAATAATACCGACGCAATAATAACATCAAATGCATCCTTGTCGAATAATTACAATCCagtagataataaaatttcgaactcacagcaacagcaacaaccGGTATCTATAATTGCCCATTCTCAGGATCATCAAATGAGTTCTTCAAATGATGCGAATCGGACAAGTGGGTCACTACAAATGCATCATTTAAATTCATCACAGGAACACCACGTGGTATATTAA
Protein Sequence: MNSENLQSEENNSQLGNQQENSIIRQGSSTSTSTTINNTSSTQSPDIHINPLTLSSISPVPEVLSTITPDASMILGTSPHSLPISLPSGSSLNNISSSMDSTASMQSNLNLTSLHSNLINNDNHPSALQLHPPPPQQQMQMGQDGLIMDVRQAPKELKVFESSQLEHFQHQQQQQQQQHQHQSQQTQQQQPQLSSPSHRQENRAVDHSMNNSDSLHLSQPMSSDIRNNEPMLNVKDTKIHNSKLNLQNTQQFPDQQSDLKPNSNQSQLMDVRTADGSIVKIAAGIQEQDLTMYKVNIDDLNQFLTCHEIFGKLPNDMLAMPTAGMSTNPTSSVSTSTTTSTITDSHRNDGCPISPKQENNMGQGGSASGSGLDEDSKSQLSQGVHSCDICGKMFPFRYQLIVHRRYHNERKPFICQVCGQAFNTSDELTKHGKVHLGGSMFICTVCFNVFANDASLERHMKRHSADKPFSCSICQKTFARKEHLENHTRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPFRCDICKKSFTRKEHYMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKAFTRKDHLVNHVRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGELPHRCQYCSKSFTRKEHLTNHVRIHTGDSPHRCDFCQKTFTRKEYLTNHLKQHSQDNPNCCNICSKPFTRKEHLINHMSRSHTGERPFSCDECGKSFPLKGNLLFHQRSHNKGSTAERPFRCDLCPKDFICKGHLVSHRRSHSDERPHICEHCGKTFVEKGNLLRHMKKHVLDTAYAQIPKLEPGTQFAGPKVEPGTQFPNLSEAISTVVTSMETVSNNTDAIITSNASLSNNYNPVDNKISNSQQQQQPVSIIAHSQDHQMSSSNDANRTSGSLQMHHLNSSQEHHVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457737;
90% Identity: iTF_01458833;
80% Identity: -