Smar023995.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- -
- Assembly
- GCA_951509765.1
- Location
- OX608080.1:19461192-19474283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6e-05 0.0092 17.9 1.7 1 23 586 608 586 608 0.97 2 18 1.8e-05 0.0028 19.5 0.4 1 23 614 636 614 636 0.97 3 18 0.0015 0.24 13.4 0.5 1 23 642 664 642 664 0.95 4 18 3e-05 0.0046 18.8 3.1 1 23 670 692 670 692 0.97 5 18 6.8e-05 0.01 17.7 4.7 1 23 698 720 698 720 0.99 6 18 0.00012 0.019 16.9 5.7 1 23 726 748 726 748 0.97 7 18 6.1e-07 9.4e-05 24.1 4.3 1 23 754 776 754 776 0.98 8 18 2.2e-07 3.4e-05 25.6 2.4 1 23 782 804 782 804 0.97 9 18 0.00013 0.02 16.8 6.7 1 23 810 832 810 832 0.97 10 18 3.7e-05 0.0056 18.6 6.5 1 23 838 860 838 860 0.98 11 18 6.2e-06 0.00095 21.0 4.5 1 23 866 888 866 888 0.98 12 18 2.3e-05 0.0035 19.2 7.1 1 23 894 916 894 916 0.98 13 18 1.2e-05 0.0018 20.1 7.6 1 23 922 944 922 944 0.97 14 18 1.3e-06 0.0002 23.1 7.7 1 23 950 972 950 972 0.98 15 18 0.00041 0.063 15.3 9.5 1 23 978 1001 978 1001 0.95 16 18 0.00034 0.053 15.5 0.5 1 23 1007 1029 1007 1029 0.97 17 18 0.0005 0.077 15.0 4.5 1 23 1039 1061 1039 1061 0.98 18 18 1.8e-05 0.0028 19.5 1.6 1 23 1067 1090 1067 1090 0.96
Sequence Information
- Coding Sequence
- ATGAATAGTGAACATGCAACAGCAAAAGCAACTCCTGGTGAGTCAGCAAAAGCCACAATTACTGTTGCAACAGCTAATGAATTGAATCGGCAGTAtcagcaacatcaacaacagcaacagcagcagcgtCACTCACCACAGCAACATATTAACGATACGCAACATTTACAGCAACAATTACAATTGCAACAACAGACGCAAAATCATAATATAAACGAGCAAtctgaacaacaacaacatcaactaCAACAAGGAGCACAACAAGTaacagcaaaacaacaacaactacaaattaGTACAATTTCGATGAACAACGAAAACGGTAGTGGTattggtgttggtgttgttggtggCAATACGGCAACCACAGCGACTGCCTCCATAGCTGCAAATACCGTTGgaggtgttgttgttggtggtggtggtgttgggaGTGTAGTAGATGGCGTTGTTGGTGGTCTTGCGGACAATACTTTAATACCAGTTGTAGTATCtacacaacaacagcaacaaccacaTGTAATAGCCACAACCGTAGCGCGCGATAGAAGGATCACTACCGTTCCCCCACTGACTGTTCGCAGTCACAACGTTAGTGTCACAAATCCATCAACAATCACTACGGACAATATTGCCAATTCAAAGTTATTACAAGCACAATTACAACAgcatgtacaacaacaacaacaaacgctcCAACAGACGACAACAATAAATTCAACTGTTGCAACAACAGAGACGGCAGTgcctgcaacaacaacacttttaCCAAATACAACAAATTTGAGCAAATATTGGGTGGTGTCTAATGGACAAGCATTGCCCTATAACATACTGCCTAATGGCACGATAATTACACCTCATCAACGGCAACCAGCAACATCTGAGCAACATACGCACACTCAGCAGCAggtacaacagcaacaacaacaacaatcaaatgCATTACAAATACATGCTGCTATAAATGCAAGTGCTGACaatcagcaacagcaacagcaacatgTTTCGCAGCAGCAACAAATAGCCGCTGCTGTGCAGCAGTCACAACAACCgccgcagcaacaacaacaacagcaacagcagcagcaacaacaaatattacaaaGAGAGTCCATTAAAGAGGAAAAACCATTTTCCGATAACATAAAGTTAAACCAATCAATCGTCATGCAACACGTCAATGCAGCGACGTCAGTCGCGCCGACATCGTCCGGTGCCACAACAATTACCTTAGGTACACCGAAAACCGAAATTAAAGATGATGTTGGTATGGGCAAACCACCACCCGGCATTGAAATGTATAAAGTTAACATTGAAGATATCTCACAACTTTTCACTTACCATGAAGTTTTTGGTAAAATGCACGGAGATGTCTTGAATCAACAATTGGCTGCACATGCAGTACCAAATGCTGTCACTGCACCACCAACATCACACAATAATGCTGCAAGTAATAATGCAGCTGTTGCAGCAGTGGTTGCCAGTGCCAATGCTGCTGCTGTAGCTGCAGCTGCGGCTGCGGCAGCCGCAAATTCAACAGCTGGTGGTGTGGCACCAACAACAACCGCAAATTTAACAACAGCGATCAGTACAATCGGTACAACAACTACACCAGCTACAGCTATAACATCAGCAACACCTACAGTTACTGGTGAATTATTAATGCCTAAAATGGAGGGTGGTTTACCGGTTGTAGATCAGACGACAACAATAACACTCGCACCGGATGGTACACCAATTGCTACTGGCACACATGTTTGCGATATTTGTggcaaaatatttcaatttcgttATCAATTGATTGTACATCGACGTTATCATAGTGAACGTAAACCATTTAATTGTCAAGTATGCGGACAAGGTTTTACCACATCACAAGATTTAACGCGGCATGGCAAAATTCATATTGGTGGACCAATGTTTACGTGTATCGTTTGTTTCAATGTCTTTGCAAATAATGCCAGTTTAGAGCGTCATATGAAACGACATTCAACCGATAAACCATTCGCATGTACAATTTGTCAGAAGACTTTTGCACGCAAAGAACATTTGGATAATCATTTTCGTTCACATACGGGCGAAACGCCGTTCCGTTGTCAATATTGTGCTAAAACTTTTACACGCAAGGAGCACATGGTGAATCATGTGCGTAAGCATACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGAAAGGAACACTATGTCAACCACTATATGTGGCATACTGgCCAAACACCACATCAGTGTGATGTATGCGGTAAGAAGTATACGCGAAAGGAACATTTAGCAAATCATATGCGTTCTCATACAAACGATACGCCATTTAGGTGTGAAATATGCGGCAAAAGTTTTAGTCGCAAGGAACACTTCACCAATCACATTCTCTGGCATACAGGCGAAACACCTCATCGTTGCGATTTTTGTTCGAAAACATTTACGCGTAAAGAACATTTATTAAATCATGTACGTCAACATACAGGCGAATCTCCACATCGTTGTACATATTGTTTGAAAACGTTTACACGCAAGGAACACCTAGTAAATCATATACGTCAACATACTGGTGAAACGCCATTTAAATGCACCTACTGCACAAAAGCATTCACACGTAAAGATCATATGGTGAATCATATAAGGCAGCATACGGGCGAATCGCCACACAAATGTACATATTGTACTAAAACATTTACGCGCAAAGAACATTTGGTAAATCATGTACGTCAACATACAGGCGAATCGCCACATCGTTGCAGTTACTGTAAGAAGACATTTACACGTAAAGAACATTTGACGAATCATGTGCGTTTGCATACGGGTGATTCGCCGCATAAATGTGAATATTGTCAGAAGACATTTACACGTAAAGAGCATCTAAACAATCATATGCGTCAGCATTCTAGCGACAATCCACATTGTTGTAATGTTTGTAACAAACCATTTACACGCAAGGAACATCTCATAAATCATATGTCACGTTGTCATACTGGCGATCGTCCTTTTGCTTGTGAAACATGTGGTAAATCATTTCCCCTTAAAGGCAATTTACTATTCCATCAACGCAGTCATACTAAGGGACAGGAATGTGAACGTCCGTTTTCGTGCGAGAAATGTCCAAAAACCTTTATATGCAAGGGTCATCTTGTGTCGCATATGCGTTCGCATTCTGGCGAGAAGCCACATGCTTGCACACTATGTAGCAAAGCTTTTGTAGAACGTGGCAATTTAAAGCGTCATATGAAAATGAACCATCCTGATGCGGTTATGCCGCCACCACCACAACCCCATCCACAAATTCCAGCTGGCATGTTGGCGTCGGTTAAAGAAGAAATCAAGCCAATATTTCTTCCACATCAAACGCCTACAATGCACACGATTCAACAGATAACATCGGGTGCTGCAGCTGCAAATGCTGTACAATTGGCGCCCGGTCTTGTGCCATTAGTCACTTCAACGATTACTTCGCACAACAGCCAGAaaccacagcaacaacaacagcagcagcagcagcaacaacagcaacaggcgcatcaacaacatcagcaacaagtgcaacagcaacagcagcagcaacaacaacaacaacaagtacaacagcagcagcagcaacaacaccaacaacagcagcagcaacagcaacaattgcaacaacaacaactcctaCAGTTATCGATACAAcaccaacagcagcaacaacaagagcaacatcgccaacatcagcaacaacaacaacaacagcaggcaCATCATCAACAAACCCAGGCACAAGCACAACAACAAGCGCATGCGCCACAACCACAACCGCAGGCACAGCCTCCACAACAGCCGCCATCTGTGCCTATCGCACTTATACAAACCGATCCAAGCGTTTTGGCTCGTGCTGCAATGCAATTGCAGCATTTACCAGCTAATGTTGAACAGCATCCGGTGGTTTACTAA
- Protein Sequence
- MNSEHATAKATPGESAKATITVATANELNRQYQQHQQQQQQQRHSPQQHINDTQHLQQQLQLQQQTQNHNINEQSEQQQHQLQQGAQQVTAKQQQLQISTISMNNENGSGIGVGVVGGNTATTATASIAANTVGGVVVGGGGVGSVVDGVVGGLADNTLIPVVVSTQQQQQPHVIATTVARDRRITTVPPLTVRSHNVSVTNPSTITTDNIANSKLLQAQLQQHVQQQQQTLQQTTTINSTVATTETAVPATTTLLPNTTNLSKYWVVSNGQALPYNILPNGTIITPHQRQPATSEQHTHTQQQVQQQQQQQSNALQIHAAINASADNQQQQQQHVSQQQQIAAAVQQSQQPPQQQQQQQQQQQQQILQRESIKEEKPFSDNIKLNQSIVMQHVNAATSVAPTSSGATTITLGTPKTEIKDDVGMGKPPPGIEMYKVNIEDISQLFTYHEVFGKMHGDVLNQQLAAHAVPNAVTAPPTSHNNAASNNAAVAAVVASANAAAVAAAAAAAAANSTAGGVAPTTTANLTTAISTIGTTTTPATAITSATPTVTGELLMPKMEGGLPVVDQTTTITLAPDGTPIATGTHVCDICGKIFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLVNHVRQHTGESPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPQPHPQIPAGMLASVKEEIKPIFLPHQTPTMHTIQQITSGAAAANAVQLAPGLVPLVTSTITSHNSQKPQQQQQQQQQQQQQQAHQQHQQQVQQQQQQQQQQQQVQQQQQQQHQQQQQQQQQLQQQQLLQLSIQHQQQQQQEQHRQHQQQQQQQQAHHQQTQAQAQQQAHAPQPQPQAQPPQQPPSVPIALIQTDPSVLARAAMQLQHLPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00303939; iTF_01563939; iTF_00191492; iTF_01563079; iTF_00992840; iTF_00083245; iTF_00192953; iTF_01045626; iTF_00081499; iTF_00082310; iTF_00193723; iTF_00192220;
- 90% Identity
- iTF_00992840;
- 80% Identity
- -