Spec012245.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_951805265.1
- Location
- OX638207.1:6747702-6751216[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-109 4.8e-105 351.3 27.5 8 300 51 339 48 339 0.93 2 3 0.0015 30 3.9 2.5 120 172 337 389 336 396 0.92 3 3 0.025 5e+02 -0.1 4.8 131 167 369 405 353 413 0.65
Sequence Information
- Coding Sequence
- ATGGTGGTCGTTCCCGAAATCGTCGAAACGGCACCCTCGGCCAATCGTCGGGACGTTTTCACGTGTCTCAGGAGGGACCCTTCGATCAGTGATTGTTTGTACGAAATCGGACCGGCTCGCGTCCTGTTAGTGACCACGGTTTCAATGTGCAAGAAAACGGCGCGGGCCGAAGCCAGGGAGATACGTATGCGCGAACTGGAGAGACAACAGAAGGAACAGGAGGAAAATGCTGACAGGCAATTCGACATGTTGGCCGAGCCGATGGCGAGGACCACCAGGCAACTGTCGACTGGCGGCAGTCGATTTTTATCGAGCAGGCGGAGTTCTGAAGATTCCCTGGAAGACGGGGGGAGTCTCCGGGATTTGCGACACGAACTGAAGGAGGTCGAAGAGAAATTTAGGAAGGCTATGATCGCCAATGCTCAACTCGACAACGACAAGGCGGCCCAGACCTACCAACTGGAACTGCTCAAAGACAGATTGGAGGAGTTGGAGGAGGAACATTCGCAGTTGAAGAGGGAGCACAAGGACAAGTGTCGGGAGCACGATCAGTTGAAGCGGCTATGTGCGAAACTGAAGGACGATTTGGCTGTGACTAGAGCGGAGCTCGAGGAAAGGGATCAACTTATCACTGAAAAGGGTCTGGTTATTGTCGGAGAAGATTTGCCGAACGACGAGGAACTTAGGAACGGGGATGCGAGCCTTACTAGTATAGGAACGCCCAAGAAGGCCCTAGTTAGTGTAGAAAATGCTCAATTGTTGGAAAGCGCCGGCGGGGGTAGTTTAGATGTTCGGCTGGGCAAATTTGCGTTGGAAAAGGGGGAGCTGCAGGACCAGATCAGCCACTTAAAACTAGAATTAGAAGAGGAGCGGAGCAAGAGGAAAAAGTCGACCGGTACCCTCAACGGACCTTCTTCCGATTACGATTCGGACGAATTAGACATACAAAGAGAAGCTAGTAAACAATTGGGTGATTACAAGTTTCGCGCCCAAAAAGCCGAGCAAGACGTCGCTACTTTACAAGCGACCGTTGCCAGACTAGAGAGCCAAGTGATCAGGTACAAAGCCGCCGCTGAAGTCTCGGAGAAATCCGAAGAAGCCCTGAAGggtgaaaaaagaaaactacaAAGAGAGGCCCGCGAAGCGCAAAGTAGGGTGGAAGAGCTAGAAACGGCGCATACGCACTTGCAAAAGCGCTTAGATAAGTTGAAGAACGCTAAATCGGCATTGCTGAAGGACCTTTGA
- Protein Sequence
- MVVVPEIVETAPSANRRDVFTCLRRDPSISDCLYEIGPARVLLVTTVSMCKKTARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTTRQLSTGGSRFLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHKDKCREHDQLKRLCAKLKDDLAVTRAELEERDQLITEKGLVIVGEDLPNDEELRNGDASLTSIGTPKKALVSVENAQLLESAGGGSLDVRLGKFALEKGELQDQISHLKLELEEERSKRKKSTGTLNGPSSDYDSDELDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKSEEALKGEKRKLQREAREAQSRVEELETAHTHLQKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01283394; iTF_01311558; iTF_00068048; iTF_00956310; iTF_01277909; iTF_01014487; iTF_00110554;
- 90% Identity
- iTF_01283394;
- 80% Identity
- -