Pser015584.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_905333025.1
- Location
- HG995156.1:10960735-10964801[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-115 4e-111 371.4 29.6 1 300 76 371 76 371 0.94 2 2 0.015 3.3e+02 0.7 5.6 122 172 371 421 369 445 0.60
Sequence Information
- Coding Sequence
- ATGCAAATATTTGCTCGACTTCTCGCCATATCGAACCAGTTAGATGGTGTCGGGCGTAATTCGGTATTAGCAAAAATGGTGGTCGTTCCCGAAATTGTCGCGTCTCCCAATCGAAGAGACTTATTTACATGTCTTCGAAGAGACCCTTCGATCAGTGATTGTTTGTATGATATCGGACCGGCTCACGTTCTGTTGGTGACCACGGTTTCACTATGCAAGAAAACGGCGGAAGCACGGTTGTGGGCGAAACGACAGGCGAGGGCCGAAGCCAGAGAGATACGTATGCGTGAACTGGAGAGACAACAGAAGGAACAAGAAGAAAATGCTGACAGGCAATTCGACATGTTGGCCGAGCCTATGGCGAGGACCACCAGACAACTGTCGACAGGAGGCAGTCGATATTTATCGAGCAGGCGAAGTTCTGAAGATTCCCTGGAAGATGGGGGAAGTCTCCGGGATTTGCGACACGAACTGAAGGAGGTCGAAGAGAAATTCCGGAAAGCCATGATTGCCAATGCTCAACTCGATAACGACAAGGCGGCCCAAACCTACCAACTGGAACTGCTCAAAGACAGATTGGAGGAGTTAGAAGAGGAACATTCGCAATTGAAGAGGGAGCATAAGGATAAGTGTCGGGAACACGACCAGTTGAAACGGTTATGCGCGAAATTGAAGGACGATTTGGCTGTGACTAGAGCGGAACTTGAGGAAAGAGATCAACTGATTTCCGAAAAGGGGCTGGTTATTGTTGGAGAAGATTTGCCGAACGACGAGGAATTTAGGAATGGGGACGCGAACCTTACTAGTATAGGAACGCCAAAGAAGGCCCTAGTTAGTGTAGAAAATGCTCAATTGCTGGAAAGCGCCGGCGGAGGCAGTTTAGATGTCCGACTGGCGAAGTTTGCCGTGGAAAAGGGCGAGTTGCAGGACCAAATCAGCCATTTAAAACTAGAGTTAGAAGAGGAGCGGAGCAAAAGAAAAAAGTCGACCGGTACCCTTAACGGTCCTTCTTCCGATTACGATTCGGACGAATTAGACATACAAAGAGAAGCTAGTAAACAACTCGGTGATTACAAGTTCCGCGCCCAAAAAGCCGAGCAAGATGTCGCCACTTTACAAGCGACTGTTGCCAGGCTAGAAAGCCAAGTGATCAGGTACAAAGCCGCTGCTGAAGTCTCAGAGAAATCCGAAGAAGCCCTCAAAGGCGAAAAAAGAAAACTACAAAGGGAGGCCCGCGAAGCGCAAAGTAGGGTGGAAGAACTAGAAACGGCACATACGCATTTGCAAAAGCGCTTAGATAAGTTGAAGAACGCCAAATCGGCGTTGTTGAAAGAACTTTGA
- Protein Sequence
- MQIFARLLAISNQLDGVGRNSVLAKMVVVPEIVASPNRRDLFTCLRRDPSISDCLYDIGPAHVLLVTTVSLCKKTAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTTRQLSTGGSRYLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHKDKCREHDQLKRLCAKLKDDLAVTRAELEERDQLISEKGLVIVGEDLPNDEEFRNGDANLTSIGTPKKALVSVENAQLLESAGGGSLDVRLAKFAVEKGELQDQISHLKLELEEERSKRKKSTGTLNGPSSDYDSDELDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKSEEALKGEKRKLQREAREAQSRVEELETAHTHLQKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329811;
- 90% Identity
- iTF_01329811;
- 80% Identity
- -