Agla008287.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000390285.2
- Location
- NW:37740-62765[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-114 1.2e-109 365.9 29.8 1 300 82 368 82 368 0.96 2 2 0.11 1.7e+03 -2.3 3.5 6 230 399 434 377 443 0.45
Sequence Information
- Coding Sequence
- ATGTTCAGCCCGTTCGCCGTCGtgctcaaatatttattttattatataaaattacatatgGTTGCTATTGGCGTAAGCTGTTGCTTTACAAGTGACACCGTGCTTAAAAAAATGGTCGTTGTTCCGAACgtggttatttttatgaaccaTTTGAACAGGACTCCCTCATTGAGTGACTGTTTGTACGAGAAACCCAAgtctaatttattattcgttACCACCGTTTACATGTGCAAGAAAAACGCGGAAGCCAGACTTTGGGCAAAGAGACAGGCAAGGGCGGAAGCTAGGGAAATACGTATGCGCGAATTGGAGCGCCAACAAAAGGAACAAGAAGAAAATGCAGATAGACAATTCGATATGTTGGCCGAACCAATGGTCAGGACTCCCAGGAGTGCAACCGCCGGTAGTCGGTATCTCTCTAGTCGAAGAAGCTCTGAAGATTCCTTGGAAGATGGGGGCAGTCTCAGAGAATTAAGGCACGAACTCAAGgaggttgaagaaaaattcCGTAAGGCTATGATTGCTAATGCTCAACTCGACAATGACAAAGCGGCACATACTTATCAATTGGAGTTACTAAAAGATAGGTTAGAAGAATTAGAAGAAGAACATTCCCAATTGAAAAGGGAGCATCGCGAGAAATGCAGAGATCACGATCAGTTGAAGAGGTTGTGTACCAAACTGAAGGAAGACTTGGCTGTGACTAAAGCTGAACTGGAAGAGAGGGATCAGTTGATCACGGAGAAAGGTCTGGTTATCGTAGCCGAGGAATTGCCTCCTGATGAAGACGGATTGGTGCAGTCTCCCAAGAAAGCCTTAATTAGCATAGAAAATGCCCAAATGTTGGAGGGCGCAGGTGACGGAAGTCTAGACGTACGATTAGCCAGATTCGTCAAGGAGAAGAGCGAATTGCAAGACCAAATTAGCCATTTAAAATTAGAACTAGAGGAAGAGAAGAGCAAAAGGAGGAAGCACAGCTCGACGGGTCTACTTAATGGACCGTCTTCGGACTGTGATTACGACGATGTGCAGAgagAAACCAGTAAACAACTCGCGGATTACAAATTTAGAGCGCAGAAGGCAGAGCAGGATGTGGCTACGCTTCAGGCGACGGTAGCACGGCTCGAAAGTCAAGTTATACGTTACAAAACGGCGGCGGAAATATCGGAACAGTCGGAGGAGGCTCTCAAGGCGGAAAAAAGGAAACTGCAGAGAGAGGCAAGGGATGCGCTAAGTAGAGCGGAGGAATTGGAGACGTCAAATACCCACCTTCTTAAGAgattagataaattaaaaaccGCAAAATCAGCTTTACTaaaagaactttga
- Protein Sequence
- MFSPFAVVLKYLFYYIKLHMVAIGVSCCFTSDTVLKKMVVVPNVVIFMNHLNRTPSLSDCLYEKPKSNLLFVTTVYMCKKNAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMVRTPRSATAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAHTYQLELLKDRLEELEEEHSQLKREHREKCRDHDQLKRLCTKLKEDLAVTKAELEERDQLITEKGLVIVAEELPPDEDGLVQSPKKALISIENAQMLEGAGDGSLDVRLARFVKEKSELQDQISHLKLELEEEKSKRRKHSSTGLLNGPSSDCDYDDVQRETSKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329811;
- 90% Identity
- iTF_01014487;
- 80% Identity
- -