Spla008265.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949788335.1
- Location
- OX460922.1:4201995-4213663[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-110 5.7e-106 354.1 30.3 1 300 28 321 28 321 0.94 2 3 0.0063 1.1e+02 1.9 3.6 120 170 319 369 318 381 0.88 3 3 0.15 2.7e+03 -2.7 3.9 196 236 354 393 340 396 0.47
Sequence Information
- Coding Sequence
- ATGGACGGCGTCGGGGGCCGGAGACGACTCGCCGCCAAATCGTCCGCGGAGGACCAAGCCCTCGACCAAATCGCCAAAGAGGCGGAAGCGCGACTTTGGGCCAAACGTCAGGCGCGAGCCGAGGCGAGGGAGATCCGCATGCGCGAGCTGGAGAAGCAGCAGAAGGAGCAGGAGGAGAATGCGGACCGGCAGTTCGACATGCTGGCCGAGCCCGTGGTCCGGACGCCCAGGGCGGCCGGATCCCGGTTCCTGTCGAGCAGGCGCAGCTCCGAGGATTCCCTCGAGGACGGCGGCAGTCTCAGGGACCTGCGAAACGAGTTGAAGGAAGTCGAGGAGAAGTTCCGGAAGGCGATGATAGCCAACGCTCAACTGGACAACGACAAGACGTCGCAAACGTACCAACTCGAACTGCTGAAAGACAGGCTGGAGGAATTGGAACAGGAGCAGGCTCAATTGAAGAGGGAACACAGGGACAAATGCAGGGAGCACGACCAGTTGAAGAGGCTGTGCGCCAAGCTCAAGGACGATCTGGCAGCGACCAGGGCCGAACTGGACGAAAGGGATCTGCTGATAACCGAAAAGGGGCTGGTCATCGTGGGCGAAGATTGTCCGCTGGACGAATCTGTGGATCGGCGAAACGGCGATACCAGTCTCACCAGTATCGGCACGCCGAAAAGGGCGCTGGTCAGCGTGGAGAACGCCCAATTGCTCCAAAGTGCCGGCGAAGGAAGTTTAGATGTCCGACTGGCGAAATTCGCCAGGGAAAAGGGGGAGTTGCACGACCAGATTAGCTCGTTGAGATTGGAATTGGAAGAGGAGAGGAGTaagaggaaaaaatcttcGGGTACTTTGAACGGGCCTTCCAGTGAAAACGACGACGAAGTGGATTTGCAACgtgagGCTAGTAAACAGTTGGGTGATTATAAGTTCCGGGCCCAAAAGGCCGAGCAAGATGTGGCAACGCTGCAGGCGACGGTTGCCCGTCTAGAGAGTCAAGTAATTCGGTACAAAACGGCCGCAGAAATGTCCGAAAAATCGGAAGAAGCTCTGAAACTCGAAAAGAGGAAACTTCAAAGAGAGGCGAGGGAGGCGCAAGGTAGAGCCGAGGAACTGGAAACTTCGAACACGCACTTATTAAAACGCTTAGATAAACTGAAGAACGCAAAGTCGGCCCTCTTGAAAGAGCTTTGA
- Protein Sequence
- MDGVGGRRRLAAKSSAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELEKQQKEQEENADRQFDMLAEPVVRTPRAAGSRFLSSRRSSEDSLEDGGSLRDLRNELKEVEEKFRKAMIANAQLDNDKTSQTYQLELLKDRLEELEQEQAQLKREHRDKCREHDQLKRLCAKLKDDLAATRAELDERDLLITEKGLVIVGEDCPLDESVDRRNGDTSLTSIGTPKRALVSVENAQLLQSAGEGSLDVRLAKFAREKGELHDQISSLRLELEEERSKRKKSSGTLNGPSSENDDEVDLQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEMSEKSEEALKLEKRKLQREAREAQGRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329811;
- 90% Identity
- -
- 80% Identity
- -