Malt027221.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037114965.1
- Location
- CM073430.1:70075410-70086314[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-114 4.1e-109 366.0 30.6 1 300 78 364 78 364 0.97 2 2 0.062 3.2e+03 -1.4 3.1 6 224 395 424 365 439 0.43
Sequence Information
- Coding Sequence
- ATGACAGAAAAGGGAGGTGTGTGTCCGGAAATTATTTCGCAGAGTAATAAAACAGAAGAAAATAATAACGTGTTCATAATAGAAGGTGCAACCGATGATGATACCTCGGATTATTTTGAACAGACTGACAGTTTCCGTTCTTGCAGTGGCGGCGAAACCAGTAAAGTTGATACCGATGCAGCGGATGAAAGTGATGTGATTCATTCCTTTATACAAAATACCAGTGATGAAGCAGAAGCTAGACTTTGGGCAAAGAGGCAGGCAAGGGCGGAAGCTAGAGAAATACGTATGCGCGAATTGGAGCGCCAGCAGAAAGAACAAGAAGAAAATGCAGATAGACAATTCGATATGTTGGCCGAACCGATGGTCAGGACCCCCAGAAATACAACGGCTGGTAGTCGGTATTTGTCTAGTCGGAGAAGTTCTGAGGATTCCTTGGAAGATGGAGGCAGTCTCAGAGAATTAAGGcatgaacTCAAGGAGGTTGAAGAAAAATTCCGTAAGGCGATGATTGCTAATGCTCAACTCGACAATGACAAAGCAGCGCATACTTATCAATTGGAGCTGTTAAAAGAtagGTTAGAAGAATTAGAAGAGGAACATTCCCAGTTAAAAAGGGAGCATCGTGAAAAATGTAGAGACCACGATCAGCTGAAAAGGTTGTGTGCCAAATTAAAAGAAGACTTGGCTGTGACTAGGACGGAGCTGGAAGAAAGAGATCAGTTAATTGCGGAGAAGGGTCTAGTTATCGTAGCTGAGGAATTGCCTCCCGATGAAGATGGGTTAATACAGTCCCCCAAGAAAGCCTTAATTAGCATAGAAAATGCCCAGATGTTGGAGAGTGCAGGTGACGGAAGTCTAGatgTACGGTTAGCCAGATTCGTTAAAGAAAGAAGCGAATTGCAAGACCAAATTAGCcatttaaaattagaattagaAGAAGAAAAGAGCAAAAGGAGGAAGCACAGTTCGGCAGGTCTACTTAACGGACCGTCTTCCGACTGCGATTACGACGATGTGCAAAggGAAACCAGTAAGCAACTGGCGGATTATAAGTTTCGAGCGCAGAAGGCCGAGCAGGACGTCGCCACGCTTCAAGCGACCGTCGCGCGGCTCGAAAGCCAAGTTATACGTTACAAAACCGCAGCGGAAGTATCGGAACAGTCGGAGGAGGCCCTTAAGGCGGAAAAGAGGAAACTGCAGAGAGAGGCAAGGGATGCACTAAGTAGAGCAGAGGAATTGGAGACATCAAATACCCATCTTCTTAAGAgattagataaattaaaaaccGCAAAATCAGCTTTACTAAAAGAACTTTGA
- Protein Sequence
- MTEKGGVCPEIISQSNKTEENNNVFIIEGATDDDTSDYFEQTDSFRSCSGGETSKVDTDAADESDVIHSFIQNTSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMVRTPRNTTAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAHTYQLELLKDRLEELEEEHSQLKREHREKCRDHDQLKRLCAKLKEDLAVTRTELEERDQLIAEKGLVIVAEELPPDEDGLIQSPKKALISIENAQMLESAGDGSLDVRLARFVKERSELQDQISHLKLELEEEKSKRRKHSSAGLLNGPSSDCDYDDVQRETSKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329811;
- 90% Identity
- iTF_00110554;
- 80% Identity
- -