Rlut029375.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_958510855.1
- Location
- OY294041.1:28509713-28520602[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.044 1.6e+03 -0.9 2.2 83 131 46 92 6 104 0.60 2 3 3.3e-104 1.2e-99 334.4 34.1 1 300 106 401 106 401 0.93 3 3 0.024 8.8e+02 -0.1 7.0 121 171 400 450 399 476 0.64
Sequence Information
- Coding Sequence
- ATGAGTGATACGAACTTGAAGAATTCTAATACTTCCGGTAGTGTCGACTCGCTGGAAGATATTTTAAACGATTTAAATTCTGAAAGTGACGATTTGGATTTTGTGGGTGGTGAGGAAAAATTGAACGAGTTGGATGTTACATTGAGGAAACCGCGGATTTCTAAAATCGAAGAGGAAGAAaattaccaaaagaaaattcaaaaaaatattttgcaacaagAACATGATAATTTGGTTATGCTCGATAATGTAAAGGACGAACTTAATCAAACTAATAACATCATTAAACAGTTTCTTGATGACTGCAACGATGATGCGGAGGCGCGGCTTTTGGCAAGAAGGCAGGCCAGAGCAGAGGCGAGAGACATACGGATGCGGGAATTAGAGCGGCAACAAAGAGAACAAGAAGAAAATGCCGATAGGCAATACGACATGCTGGAGGCGACTAGTAGAGCGACGCGAACAGTTGGTAGTAGGTACCTTTCGAGTAGGCGAAGCTCAGAGGATTCGCTGGAAGATGGTGGGAGTATCAGAGAAATAAGACACGATCTTAAAGAAATGGAAGAGAAGTTCCGTAAGGCCATGATAGCGAACGCTCAGCTGGATAATGACAAAGCATCGCAAACTTATCAGTTAGAATTGCTGAAGGATAGGTTGGAAGAATTGGAGGAAGAACATTCCCAGTTGAAGCGCGAGCATAGGGACAAGTGTAGGGATTATGATCAATTGAAGCGTTTGGCTTCCCAGCTCAAAGACGACGTGGCTGTGGTTAAGGCTGAGTTAGAGGAGCGAGATCGGCTAATAACCGAGAAAGGTTTAGTTATAGTAATAGAAGATCTTATTCCAATTGAAGAACAAAATAGTCGTGATATAAGTAATTGTAGTAGTGCCGGAAATACTCCTAGAAAGGCCTTAGTGAGTGCCAAAAATGCCCAACTATTAGAAAATTCGGGCGAAGGAAGCCTTGaCGTCCGGTTAGGCAGGTTTGCGACGGAAAGAAAAGACCTTGAGGATCAGATAAGTCATTTACGTTTAGAATTAGAAGAAGAGAGGAGTAAGAAGAGGAAAAGTAGTGGGGGTGTTGCTTTGAATGGTCCCACATCCGATTCGGAATTAGATGCCGATGATTTGCaaaaAGATGTCGTCAGGCAGTTGGCCGATTATAAATTTAGAGCTCAAAAGGCCGAGCAGGATGTGGCAACGTTGCAGGCGACCGTCGCCAGATTGGAGAGTCAAGTTATTAGGTACAAATCTGCCGCCGAAATTTACGAAAAGTCGGAAGAAGCGCTGAAACAAGAAAAGAGGAAGTTACAGAGAGAGGCCCGCGAAGCTCAAAACAAGGCGGAAGAACTGGAAACATCAAACTCTCACCTGGTAAAGCGTTTAGATAAGCTCAAAAATGCCAAATCAACGTTACTCAAAGAGCTTTGA
- Protein Sequence
- MSDTNLKNSNTSGSVDSLEDILNDLNSESDDLDFVGGEEKLNELDVTLRKPRISKIEEEENYQKKIQKNILQQEHDNLVMLDNVKDELNQTNNIIKQFLDDCNDDAEARLLARRQARAEARDIRMRELERQQREQEENADRQYDMLEATSRATRTVGSRYLSSRRSSEDSLEDGGSIREIRHDLKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLKREHRDKCRDYDQLKRLASQLKDDVAVVKAELEERDRLITEKGLVIVIEDLIPIEEQNSRDISNCSSAGNTPRKALVSAKNAQLLENSGEGSLDVRLGRFATERKDLEDQISHLRLELEEERSKKRKSSGGVALNGPTSDSELDADDLQKDVVRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEIYEKSEEALKQEKRKLQREAREAQNKAEELETSNSHLVKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268265; iTF_00927690; iTF_00269803; iTF_01291566; iTF_00271153; iTF_00272529;
- 90% Identity
- iTF_00927690;
- 80% Identity
- -