Cruf011413.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947369205.1
- Location
- OX376308.1:8974637-8979469[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.014 5.3e+02 0.8 0.3 83 154 45 77 12 95 0.61 2 3 1.6e-104 6.1e-100 335.5 33.0 1 300 104 399 104 399 0.93 3 3 0.017 6.4e+02 0.5 6.9 120 171 397 448 396 473 0.79
Sequence Information
- Coding Sequence
- ATGGACGATGTGAAGAATTCGAATACTTCCGGTAGTGTCGACTCGCTGCAAGATATTTTGAACGATTTAAATTCCGAAAGTGACAATTCGGACTTTGTGGAGGGCGGCGGTGAAAAAATAATCGAGTCCGGTGTTACACTGAGAAAACCACGAACTTCCAAAACCGAGGAGGAAGAAAATTACCATAAGTTACAAAACGACATTCGACAGCTTGAAAATTTGGACGATTCGCTCGATAACGTTAAGGACGAATTTAATCTAACCAATAATAACATCATTAAGCAGTTTCTTGATGATTGCAACGATGATGCGGAAGCGCGGCTTTTGGCAAGAAGGCAGGCCAGAGCAGAGGCGAGAGACATACGGATGCGGGAATTAGAGCGGCAACAAAGAGAACAAGAAGAAAATGCGGATAGGCAATATGACATGCTGGAGGCAACCAGTAGAGCGACGCGAACCGTTGGTAGTAGGTACCTTTCGAGCAGGCGAAGCTCGGAGGATTCGCTCGAAGATGGCGGAAGTATCAGAGAAATAAGACACGATCTTAAAGAAATGGAAGAGAAGTTCCGTAAAGCTATGATAGCGAACGCTCAGCTCGATAACGACAAAGCGTCGCAAACCTATCAGTTAGAATTGCTGAAGGATAGATTGGAAGAATTGGAGGAAGAACATTCCCAGTTGAAGCGCGAGCATAGGGATAAGTGTAGGGATTTTGACCAATTGAAGCGTTTGGCTTCCCAGCTCAAAGACGACATTGCCGTGGTTAAGGCTGAGTTAGACGAACGAGATCGGTTAATAACCGAGAAAGGCTTAGTTATAGTAATAGAAGATCTTATTCCAATTGAAGAACAAAATAGTCGTGATATAAGTAATTGTAGTAGTGCCGGTAATACCCCTAGGAAGGCCTTAGTGAGTGCCAAAAATGCCCAGCTATTAGAAAATTCAGGCGAAGGAAGTTTAGACGTCCGGTTAGGCAGATTTGCAACTGAAAGAAAAGATCTAGAAGATCAGATAAGTCATTTACGTTTAGAATTAGAAGAAGAGAGGAGTAAGAAGAGGAAAAGTAGCGGGGGGGTCACTTTGAACGGTCCCACGTCCGATTCGGAATTGGATGCCGATGACTTGCAAAAAGATGTCGTCAGGCAGTTGGCCGATTATAAATTTAGAGCTCAAAAGGCCGAACAGGATGTGGCGACGTTGCAAGCGACCGTGGCCAGATTGGAAAGTCAAGTCATTAGGTACAAATCTGCCGCCGAAATTTACGAAAAGTCGGAAGAAGCGCTAAAGCAAGAAAAGCGGAAGTTACAGAGAGAGGCCCGCGAAGCTCAAAACAAAGCGGAAGAACTGGAAACGTCAAACTCTCACCTGTTAAAGCGTTTAGATAAGCTCAAAAATGCCAAATCAACTTTACTCAAAGAACTTTGA
- Protein Sequence
- MDDVKNSNTSGSVDSLQDILNDLNSESDNSDFVEGGGEKIIESGVTLRKPRTSKTEEEENYHKLQNDIRQLENLDDSLDNVKDEFNLTNNNIIKQFLDDCNDDAEARLLARRQARAEARDIRMRELERQQREQEENADRQYDMLEATSRATRTVGSRYLSSRRSSEDSLEDGGSIREIRHDLKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLKREHRDKCRDFDQLKRLASQLKDDIAVVKAELDERDRLITEKGLVIVIEDLIPIEEQNSRDISNCSSAGNTPRKALVSAKNAQLLENSGEGSLDVRLGRFATERKDLEDQISHLRLELEEERSKKRKSSGGVTLNGPTSDSELDADDLQKDVVRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEIYEKSEEALKQEKRKLQREAREAQNKAEELETSNSHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293688;
- 90% Identity
- iTF_00927690;
- 80% Identity
- -