Clat015702.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963170105.1
- Location
- OY720626.1:43199227-43202719[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0047 1.4e+02 2.3 1.2 117 156 44 81 4 97 0.54 2 3 8.4e-105 2.6e-100 336.4 33.8 1 300 105 400 105 400 0.93 3 3 0.017 5.3e+02 0.5 7.0 120 171 398 449 397 474 0.79
Sequence Information
- Coding Sequence
- ATGGGCGATGCGAACTTGAAGAATTCGAATGCTTCCGGTAGTGTCGATTCGCTGCAAGATATTTTGAACGATTTAAATTCCGAAAGTGACAATTCGGACGTGGTGGTGGGCGACGAGGAAAAAATACACGAATTTGATGTTACACTGAGAAAACCACGTTCTTCCAAAACCGAAGAGGAAGAACATTACCAAAAGTTTCAAAACGACATTCGACAACTTGATAATTTGGACGATTCACTCGATAATGCTAAGGACGAATTTAATCTAACCAATAACATCATTAAACAGTTTCTTGATGATTGCAACGATGATGCGGAAGCGCGGCTTTTGGCAAGAAGGCAGGCCAGAGCAGAGGCGAGAGACATACGGATGCGGGAATTAGAGCGGCAACAAAGAGAACAAGAAGAAAATGCGGATAGGCAATATGACATGTTGGAGGCAACCAGTAGAGCGACGCGAACCGTTGGTAGTAGGTACCTTTCGAGCAGGCGAAGCTCGGAGGATTCGCTCGAAGATGGCGGAAGTATCAGAGAAATAAGACACGATCTTAAAGAAATGGAAGAGAAGTTCCGTAAAGCTATGATAGCAAACGCTCAGTTGGATAACGACAAAGCGTCGCAAACCTATCAGCTAGAATTGCTAAAGGATAGATTGGAAGAATTGGAGGAAGAACATTCCCAGTTGAAGCGCGAGCATAGGGATAAGTGTAGGGATTTTGAGCAATTGAAGCGTTTGGCTTCCCAGCTCAAAGACGACGTTGCTGTGGTTAAGGCTGAGTTAGAGGAACGAGATCGGTTAATAACCGAGAAAGGCTTAGTTATAGTAATAGAAGATCTTATTCCAATTGAAGAACAAAATAGTCGTGATATAAGTAATTGTAGTAGTGCCGGAAATACTCCTAGGAAGGCCTTAGTGAGTGCCAAAAATGCCCAGCTTTTAGAAAATTCAGGCGAAGGAAGTTTGGatgTCCGGTTAGGCAGATTTGCAACCGAAAGAAAAGATCTAGAAGATCAGATAAGTCATTTACGTTTAGAATTAGAAGAAGAGAGGAGTAAGAAGAGGAAAACTAGCGGGGGGGTTACTTTAAATGGTCCCACGTCCGATTCGGAATTGGATGCCGATGACTtgcaaaaagATGTCGTCAGGCAGTTGGccgattataaatttagagCTCAAAAGGCCGAACAGGATGTGGCGACATTGCAAGCGACCGTGGCCAGATTGGAAAGTCAAGTCATTAGGTACAAATCTGCCGCCGAAATTTACGAAAAGTCGGAAGAAGCGCTGAAACAAGAAAAGAGGAAGTTACAGAGAGaggccCGCGAAGCTCAAAACAAAGCGGAAGAACTGGAAACGTCAAACTCTCACCTGTTAAAGCGTTTAGATAAGCTCAAAAATGCCAAATCAACTTTACTCAAAGAACTTTGA
- Protein Sequence
- MGDANLKNSNASGSVDSLQDILNDLNSESDNSDVVVGDEEKIHEFDVTLRKPRSSKTEEEEHYQKFQNDIRQLDNLDDSLDNAKDEFNLTNNIIKQFLDDCNDDAEARLLARRQARAEARDIRMRELERQQREQEENADRQYDMLEATSRATRTVGSRYLSSRRSSEDSLEDGGSIREIRHDLKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLKREHRDKCRDFEQLKRLASQLKDDVAVVKAELEERDRLITEKGLVIVIEDLIPIEEQNSRDISNCSSAGNTPRKALVSAKNAQLLENSGEGSLDVRLGRFATERKDLEDQISHLRLELEEERSKKRKTSGGVTLNGPTSDSELDADDLQKDVVRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEIYEKSEEALKQEKRKLQREAREAQNKAEELETSNSHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293688;
- 90% Identity
- iTF_00927690;
- 80% Identity
- -