Cnig021463.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958510845.1
- Location
- OY294032.1:951492-954124[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.043 1.4e+03 -0.9 1.3 78 110 35 67 3 89 0.48 2 3 7.6e-105 2.5e-100 336.5 32.3 1 300 98 393 98 393 0.93 3 3 0.018 5.8e+02 0.4 7.1 120 171 391 442 390 468 0.77
Sequence Information
- Coding Sequence
- ATGGACGATGTGAAGAATTCTAATACTTCCGGTAGTGTCGATTCGCTCCAAGATATTTTGAACGATCTAAATTCCGAAAGTGACAATTCGGACGAGGAAAAACTAAACGAGTTTGGTGTTGCACTCAGAAAACCACGATCTTCCAAAACCCAGGACGAGGAAGATTACCAAAAGGTTCAAAACGACATTCGACAACTTGAAAACTTTGCCGATTCGCTCGATAATGTTAAGGACGAATTTAATCTAACCAATAACATCATTAAGCAGTTTCTCGATGATTGCAACGATGATGCGGAAGCGCGGCTTTTGGCAAGAAGGCAGGCCAGAGCAGAGGCGAGAGACATACGGATGCGGGAATTAGAGCGGCAACAAAGAGAACAAGAAGAAAATGCGGATAGGCAATATGACATGCTGGAGGCAACCAGTAGAGCGACGCGAACCGTTGGCAGTAGGTACCTTTCGAGCAGGCGGAGCTCGGAAGATTCGCTCGAAGACGGCGGAAGTATCAGAGAAATAAGACACGATCTTAAAGAAATGGAAGAGAAGTTCCGTAAAGCAATGATAGCGAACGCCCAGCTGGATAACGACAAAGCTTCGCAAACCTATCAGTTAGAATTGCTGAAAGATAGATTGGAAGAATTGGAGGAAGAACATTCCCAGTTGAAGCGCGAGCATAGGGATAAGTGTAGGGATTTTGACCAATTGAAGCGTTTGGCTTCCCAGCTCAAAGACGACATTGCCGTGGTTAAGGCTGAATTAGACGAACGAGATCGGTTAATAACCGAGAAAGGCTTAGTTATAGTAATAGAAGATCTTATTCCAATTGAAGAACACAATAGTCGTGATATAAGTAATTGTAGTAGTGCCGGAAATACCCCTAGGAAAGCCTTAGTGAGTGCCAAAAATGCCCAGCTATTAGAAAATTCAGGCGAAGGAAGTTTAGACGTCCGGTTAGGCAGATTTGCAACTGAAAGAAAAGATCTAGAAGATCAGATAAGTCATTTACGTTTAGAATTAGAAGAAGAGAGGAGTAAGAAGAGGAAAACTAGCGGGGGTGTTACTTTGAATGGTCCCACGTCCGATTCGGAATTGGATGCCGATGACTTGcaaaaagaTGTCGTCAGGCAGTTGGCCGATTATAAATTTAGAGCTCAAAAGGCCGAACAGGATGTGGCGACGTTGCAGGCCACCGTGGCCAGATTGGAAAGTCAAGTCATTAGATACAAATCTGCTGCGGAAATTTACGAAAAGTCAGAAGAAGCGCTAAAACAAGAAAAAAGGAAGTTACAGAGAGAGGCCCGCGAAGCTCAAAACAAAGCGGAAGAACTGGAAACGTCAAACTCACACCTGTTAAAGCGTTTAGATAAGCTCAAAAATGCCAAATCAACTTTACTCAAAGAACTTTGA
- Protein Sequence
- MDDVKNSNTSGSVDSLQDILNDLNSESDNSDEEKLNEFGVALRKPRSSKTQDEEDYQKVQNDIRQLENFADSLDNVKDEFNLTNNIIKQFLDDCNDDAEARLLARRQARAEARDIRMRELERQQREQEENADRQYDMLEATSRATRTVGSRYLSSRRSSEDSLEDGGSIREIRHDLKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLKREHRDKCRDFDQLKRLASQLKDDIAVVKAELDERDRLITEKGLVIVIEDLIPIEEHNSRDISNCSSAGNTPRKALVSAKNAQLLENSGEGSLDVRLGRFATERKDLEDQISHLRLELEEERSKKRKTSGGVTLNGPTSDSELDADDLQKDVVRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEIYEKSEEALKQEKRKLQREAREAQNKAEELETSNSHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01293688;
- 90% Identity
- iTF_00927690;
- 80% Identity
- -