Pxan001523.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phylloecus xanthostoma
Gene Symbol
-
Assembly
GCA_030142555.1
Location
JARQTF010000078.1:75551-79769[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.046 3.1 8.4 2.3 1 23 340 362 340 362 0.97
2 19 0.063 4.2 8.0 1.8 2 23 394 415 393 415 0.95
3 19 0.00017 0.012 16.1 1.3 1 23 490 512 490 512 0.97
4 19 0.0073 0.49 10.9 0.7 2 23 516 537 515 537 0.96
5 19 3.3e-05 0.0023 18.3 2.2 2 23 603 624 602 624 0.97
6 19 0.031 2.1 9.0 6.8 1 23 629 651 629 651 0.96
7 19 0.00067 0.046 14.2 0.8 1 21 657 677 657 681 0.92
8 19 0.00047 0.032 14.7 2.4 1 23 749 771 749 771 0.97
9 19 0.00028 0.019 15.4 5.1 1 23 829 851 829 851 0.97
10 19 0.00032 0.022 15.2 0.7 1 20 856 875 856 877 0.94
11 19 0.0011 0.074 13.6 0.3 2 23 888 909 888 909 0.97
12 19 5.7e-05 0.0038 17.6 0.7 2 23 948 969 947 969 0.97
13 19 3e-05 0.002 18.5 1.6 1 23 974 996 974 996 0.95
14 19 0.00012 0.0084 16.5 3.9 1 23 1002 1024 1002 1024 0.98
15 19 5.2e-06 0.00035 20.8 0.4 1 23 1040 1062 1040 1062 0.95
16 19 4.3e-07 2.9e-05 24.3 0.6 1 23 1068 1090 1068 1090 0.99
17 19 4.6e-05 0.0031 17.9 0.2 1 23 1096 1118 1096 1118 0.97
18 19 0.00017 0.012 16.1 4.1 1 23 1124 1146 1124 1146 0.96
19 19 0.012 0.82 10.3 0.4 1 20 1152 1171 1152 1173 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGACGGTATGGTCTCCGACATGGAAATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAACGATGTCGCCTCCTTATCCGCCAAGGCCATGAGCTTCGTCAGCGTTAAGATGTTACCAGGAGATGGTCTACCCTCCCAAGTATGCTGTATCTGTGCACAGAAGTTGGAGGCTGCGTACGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGGGAAAGATATGACTCGCTTAACATTAAGGAGGAACTCTTCTTTAACGAAGTAGAAGTTCAAGTCGATACTCGTTTTCAAACTGCTACAGAATCTTTGGATGAAGATATTGATGATGAAAAGAGGACTTTATTGAAGGATCATATAGCTCTGCTACAAGTGGAGAAGCTTGCAGAGGAAGAAAGAGCATTGGAAGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAGGTTGATCACGAGTCCATTCCAGAAGTCCACCAGGTCATCGATGAAGAAATGGTTCAGCAAGATGAAGACGAGGCGCaagaaatatcaaacaatTTGGATGCTCACGAACAAATCAAAGACGAGGGTACAGTTGTAGTGGATACCATGGCTGTAGAAGAACACGATTACATTGTGCAACAGGATTACACTTTACAATCGGATCGAGAATATACTACGCAAGAGGCTCCATCTGAAAATCAGGACTCGGAACAGTTCATGGAACTCTTGAACGAAGAAAACATTCCCAAGGATGATATCAACCAAGAAGAGGAACGTGATACGATGAAGGCAGAGTGTCCCTCCGAACGTGGTTTAGTCCAAACAGAAACACGAAGAAGTAAACGAAGATCATTACGAAGAGCTGCCATGGTTGACCGGAACTCCGACGAGGAAAATTACTTCGAGAACCTTAACCTCAGCTCCAGGTTGAAGCGTGCTCAGGCTGACAAAAGTGAAAGAGTATTCTTCATGTGTTACTTGTGCGACAAACAATTCTTATCGAAAGGCGTTCTCAAGGAACACATGCACTCTCACGAGGAAGTTAGAAGAGCCTTATCCCTGAAGAAGACGCCTGAGAAGTCACAGAGGGGTACAGCGAAGACACCGCCATCTGGTAAACGCGCCAACAAGTGTCCTCATTGCGGTAAAGAATATCTTTATGTGATTTCTTTCAATAAGCACCTGAAGCAACATGAGAAAGATAAATTGCAGACCAAAAAGGAACACATGCCACTAGAAGTTTCCTTCGAAGAGGATGAGAATAGTTTAAACTTTTCTAATTGCAATCGTGCACACAGTTCTAATTCGGGTGACGATAGAGAAATGGCCGAGGATGAGGAATATCTGGAGGACGATAATGAGAACGAGAAGCAGGAagatagaagaaagagaaagaggaagaaacaCGTACAATCCTATTCTTGTGACAAGTGCCCTGAGAAGTTTTACACGAAACGTGGTTTACGTAAACATGGCATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAAGAGTACGATTCTTTGGAGAAACTTAGGAACCATAGGACGAAGCATGTGATGGAAGGTGTTTTGTCCGAACAAGATTTGAAGGAAGATGTACAGGAGATTGTTGAAAAGGAGGtcgaagaggaggaggaagatgaTATCGAAGAGGATATCGAGGATGAGATAGATAACGAAGAACAGGCTTCGGATAGCCAAGAGAAAGAGGTGCACAGGAAGAGAAGATGGAACGAAACAAAAGATCTCAAGTGTCCGAACTGTCCAATGACTTACTCTCATAAGAAATCCTTGTCGAGACATTTAGAAACACATGTGGGTACCAAGTATGCTTGCAAGATGTGTTGTCAACAGTTCACCAGGAAAGACCATCTCCGTAGACATACGGAACAACATGGTAGACTAAAGTCCTTTAAATGCACGCAGTGTAATAAAACCTTTGGCAATGAATTGACACTTCGCAACCATCTCATAGCTACCAATCATAAAACTTTTGTGCATGGTCAGGAATATGATCCTAATAAAAGAATCAAAAGAGTTGCTGCGAAGGCTGCACAAAAGATTATCGACAAGATCAAAACAGAGGACGATCTTgaggatgacgaggatgaggatgataTCAATGATGATTTTGGCGATCATGGTCATGATTACGGACCGTCAAAGAAACACAGTTATAGAAAGGACTTCGAGTGCGCCACTTGTGGTAGAAAATGTGGTTCTAAGCAGTCCTTAACAAAACACATGGAGCAACACGTTAAGGATGAAAAGGCagaaaaagcagaaaagctagagaagatgaagaaggatAAGAAAGATTTGCAAAAGAATTGCGGCGGTAATCTTGCTCTTGGAATAGGAGACTTTGACATGGACGACGATGAGAATTCAGACTTTGAGAGCGGTTTGGAATGGCCAATAGACAATCACGAGTGCACTacctgtaaaaagaaatatagcaCGAAGAAGTCCCTCCTGCGACATCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGCAACGTCAAGTTCTACCGTAAGGATAAATTAAAAGCCCATTATGACAAGTGCTCAGAGAAGAATCCTGACCAGGTCAGGAAGTGCAACATCTGCGGAGACAGCTTTGAGAGTAACGAACTCCTACGAGAACACAGAGCCAAGCACGTCACCGAGGGTATCCTTACGGAAGAGGATCTTAGGGACATAGAACCCAGGCCAGAGGATCGCAAGAAGGGCGAGAAAATCGTTCGTAAACGAAGAACGGACATAGTAGGCTTAGAGTGTACCGAGTGTAACAAGCAGTACACATCCCGCAAAGGTCTTCTGCGTCATCTTCAGGTACACGAGGGTAAGAAGTACCTCTGCGACATATGCCCCAAGAAGTTCTACAGGCGAGAACACCTCAAGATTCACGTGGCTAAACACAACATGATAAAACCGTACAAGTGTACGCGCTGTACGAAGCGCTTCACCAAAGAGGAGCAGCTTACAAATCACCTGACAAAGCATGACCGTAACTTCAAGAAGAGCAAGGACACAGACAGCTCAAAGAGATTCCTCTGTGAGATTTGCTCCAAGAGTTTCACCCAGTCGACGACGTTGATAGCCCATCTAAGGGCGCACAATGGTATAAAGCCCTACGTCTGCGAGGTCTGCTCCAGGCCGTTTACTACAAATGCGTACCTGAAAATGCATATGAGAACGCATACCCAGGAACGTCCTTACATATGTCAGTATTGCTCACGCGCCTTTGCCAGAGCTGACACCCTGGCCAATCATCTGACATCTCATACTGGTGAGGCCAAATATCACTGCAAATACTGTCCTAAGAATTTCAGACGCCTCAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTACGCCTGTCCCACCTGCGACAGGAGATTCAATAACAACGGCAGCCGATACGCTCACAGCAAAAGATGCAAGCAGAACCTTTTGCAGAATCAAAATCGTAATGAGAACCTGGAACAAGTGCAGCTGCAACCTCGGATACACCAGACCATCGGACAGGCACACATAGTCAAGCCTCAAAGTGTTAAAACTATAACAATAACTAGACCAGCGGAATCAGTCACTGCTCAGCAGGTGATGCAGCACCAGGAAATCCTGATGCCACTGATCTTACCACTCACGGTGACTCTGACGGACGTTGGCGAGGAAGTGATACTTCCGGAGGGTACTAAGATATTTACTACCTCGTAA
Protein Sequence
MDAVEVNTSEPPENEDGMVSDMEICRVCLLGNLVMRDLFQENDVASLSAKAMSFVSVKMLPGDGLPSQVCCICAQKLEAAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDTRFQTATESLDEDIDDEKRTLLKDHIALLQVEKLAEEERALEEEQGDVQELQEEVDHESIPEVHQVIDEEMVQQDEDEAQEISNNLDAHEQIKDEGTVVVDTMAVEEHDYIVQQDYTLQSDREYTTQEAPSENQDSEQFMELLNEENIPKDDINQEEERDTMKAECPSERGLVQTETRRSKRRSLRRAAMVDRNSDEENYFENLNLSSRLKRAQADKSERVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKTPEKSQRGTAKTPPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDKLQTKKEHMPLEVSFEEDENSLNFSNCNRAHSSNSGDDREMAEDEEYLEDDNENEKQEDRRKRKRKKHVQSYSCDKCPEKFYTKRGLRKHGIRHIPLTCSVCNEEYDSLEKLRNHRTKHVMEGVLSEQDLKEDVQEIVEKEVEEEEEDDIEEDIEDEIDNEEQASDSQEKEVHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLETHVGTKYACKMCCQQFTRKDHLRRHTEQHGRLKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDDLEDDEDEDDINDDFGDHGHDYGPSKKHSYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKAEKLEKMKKDKKDLQKNCGGNLALGIGDFDMDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPEDRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITITRPAESVTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS