Psmy001512.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- -
- Assembly
- GCA_030142225.1
- Location
- JARQST010000089.1:31098-35334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.048 3.5 8.4 2.3 1 23 340 362 340 362 0.97 2 19 0.066 4.8 8.0 1.8 2 23 397 418 396 418 0.95 3 19 0.0002 0.014 15.9 1.4 1 23 495 517 495 517 0.97 4 19 0.0077 0.56 10.9 0.7 2 23 521 542 520 542 0.96 5 19 3.5e-05 0.0026 18.3 2.2 2 23 608 629 607 629 0.97 6 19 0.0039 0.28 11.9 6.6 1 23 634 656 634 656 0.97 7 19 0.00071 0.052 14.2 0.8 1 21 662 682 662 686 0.92 8 19 0.00049 0.036 14.7 2.4 1 23 754 776 754 776 0.97 9 19 0.00029 0.021 15.4 5.1 1 23 834 856 834 856 0.97 10 19 0.00034 0.025 15.2 0.7 1 20 861 880 861 882 0.94 11 19 0.0011 0.083 13.5 0.3 2 23 893 914 893 914 0.97 12 19 6e-05 0.0044 17.6 0.7 2 23 953 974 952 974 0.97 13 19 3.1e-05 0.0023 18.5 1.6 1 23 979 1001 979 1001 0.95 14 19 0.00013 0.0095 16.5 3.9 1 23 1007 1029 1007 1029 0.98 15 19 5.5e-06 0.0004 20.8 0.4 1 23 1045 1067 1045 1067 0.95 16 19 4.5e-07 3.3e-05 24.3 0.6 1 23 1073 1095 1073 1095 0.99 17 19 4.9e-05 0.0036 17.9 0.2 1 23 1101 1123 1101 1123 0.97 18 19 0.00018 0.013 16.1 4.1 1 23 1129 1151 1129 1151 0.96 19 19 0.013 0.93 10.2 0.4 1 20 1157 1176 1157 1178 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAGGGTATGGTCTCCGACGTGGAGATATGCCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAACGATGTCGCCTCCTTATCCGTCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGGGATGGTCTACCCTCACAAGTATGCTGTGTCTGTGCACAAAAGCTGGAGTCTGCATATGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTTTTGCGGGAGAGATATGACTCGTTAAATATCAAGGAGGAGCTCTTCTTTAATGAAGTAGAAGTTCAAGTCGATGCTCGTTTTCAAACTGCTACCGAATCTTTAGATGAGGAGattgatgatgaaaaaaggaCTTTATTAAAGGATCATATGGCTCTTTTACAAGTGGAGAAGCTTGCAGAGGAGGAAAGAGCATTGGAAGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAGGTTGACCAGGAGACCATTGAAGAAGTCCACCAGGTCATCGATGAAGAAATGGTTCAGCAAGATGAAGATGAGGCACAGGAAATAACAAACACTTTGGAAGCTCACGAACAAATTAAAGATGAGGGTACGGTTGTAGTGGATACCATGGCTGTCGAGGAACACGATTATATTGTCCAACAGGATTACACTTTACAATCGGATCGAGAATACACTACGCAAGAGGCTCCATCTGAAAATCAGGACTCTGAACAGTTCATGGAACTCCTGAATGAAGATGACATTTCCAAGGATGATGTCAACCAAGAAGAGGAACGTGATACAATGAAAGCAGAGTGTCCTTCTGAACGTGGTTTATCCCAACCAGAAACACGAAGGAGTAAACGAAGGTCATTACGAAGGGCAGCCATGGCTGACCGGGACTCCGACGAGGAAAACTACTTCGAAAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAAGTATTCTTCATGTGTTACTTGTGCGACAAGCAGTTCTTATCAAAAGGCGTTCTCAAGGAACACATGCACTCTCATGAAGAAGTTAGAAGAGCCTTATCCCTGAAGAAGACGCCTGAGAAGCCACAGAGGGGTAGCACAAGTACAGCGAAGACACCGCCATCTGGTAAACGCGCCAACAAGTGTCCTCATTGTGGTAAAGAGTATCTTTATGTGATTTCTTTCAATAAACACTTGAAGCAACACGAGAAAGATAAGGTGCAGACCAAGAAGGAACACACGCCAATGGAAGTTTCCTTCGAAGAGGATGAGAATAGTCTAAACTTTTCTAATTGCAATCATGCACACAGTTCTAATTCGGGTGATGATAGAGGAATGGCGGGGGACGAGGAATATCTGGAGGACGATAATCAGGGCGAGGATGAGAATCAAGAAgacagaagaaagagaaagaggaagaagcatATACAATCCTATTCGTGTGACAAGTGTCCTGAGAAGTTTTACACGAAACGTGGTTTACGTAAACATGGCATTAAACATATTCCATTGACGTGCAGCGTATGCAACGAAGAGTACGACTCTCTGGAGAAGCTTAGGAACCATAGGACAAAGCATGTAATGGAAGGTGTTTTATCCGAACAAGATTTGAAGGAAGATGTGCAAGAGACTGTTGAAAAAGAGgttgaagaagaggaggaagatgaTATTGAGGAGGATATTGAGGATGAGATAGATAACGAAGAACAGTTTTCAGATACCCAAGGAATGGAGGTGCATAGGAAGAGAAGATGGAATGAAACAAAAGATCTCAAGTGTCCGAACTGTCCAATGACTTACTCCCATAAGAAATCCTTGTCGAGACACTTAGAAACACATATGGGTACCAAGTATGCTTGCAAGATGTGTTGTCAACAGTTCACCAGAAAGGACCATCTCCGTAGGCATATGGAACAGCATGGTAGACTCAAGTCCTTTAAGTGCACGCAGTGTAATAAAACATTTGGCAACGAATTGACACTTCGCAACCATCTCATAGCTACCAATCACAAAACTTTTGTACATGGTCAGGAATATGATcctaataaaagaataaaaagagttGCTGCAAAGGCTGCACAGAAGATTATTGACAAGATCAAAACAGAGGACGATCTTGAtgatgacgaggatgaggatgataTCAATGATGACTTTGGCGATCATGGTGATGACTATGGACCAACAAAGAAACATAATTACAGAAAGGACTTCGAGTGCGCCACCTGCGGTAGAAAATGTGGCTCTAAACAGTCCTTAACAAAACACATGGAGCAACACGTCAAGGATGAGAAAGcagaaaaagcagaaaagctagagaagatgaagaaagagaagaaagatttACAAAAGAATTGCAGCGGTAATCTTGGTCTTGGAATAGGCGACTTCGACGTGGACGACGACGAGAATTCAGACTTCGAGAGCGGTTTGGAATGGCCAATAGACAATCACGAGTGCACTacctgtaaaaagaaatatagtaCGAAGAAGTCCCTCCTGCGACACCAACTTCTTCACGAGGAGCCAAACTTCGAGTGCGATATATGCAACGTGAAGTTCTACCGCAAGGACAAGCTAAAAGCCCACTACGACAAGTGCTCAGAGAAGAATCCTGACCAGGTCAGGAAGTGCAACATCTGTGGGGATAGCTTTGAAAGTAATGAACTCCTACGAGAACACAGAGCCAAGCACGTCACTGAAGGCATCCTTACAGAAGAGGATCTGAGGGATATCGAACCCAGGCCAGAGGATCGCAAAAAGGGTGAGAAAATCGTTCGTAAACGAAGAACAGACATAGTAGGGTTAGAGTGTACCGAGTGTAACAAGCAGTACACATCCCGGAAAGGTCTTCTGCGTCATCTCCAGGTACACGAGGGTAAGAAGTACCTTTGTGACATATGTCCCAAGAAATTCTACAGGCGAGAACACCTCAAGATTCATGTGGCTAAACACAACATGATAAAACCATACAAGTGCACGCGATGCACGAAGCGCTTCACCAAGGAGGAGCAGCTTACAAATCACCTGACGAAGCACGATCGTAACTTCAAGAAGAGCAAGGATACAGACAGCTCGAAGAGGTTCCTCTGCGAGATCTGCTCCAAGAGTTTCACCCAATCGACGACGTTGATAGCCCATTTAAGGGCGCACAACGGTATAAAGCCCTACGTTTGCGAGGTCTGCTCCAGGCCCTTTACCACCAATGCGTACCTGAAAATGCATATGAGAACGCATACCCAGGAACGTCCTTACATATGCCAGTACTGCTCACGCGCCTTCGCCAGAGCTGACACCCTTGCCAATCATCTAACCTCCCATACAGGTGAGGCCAAGTATCACTGCAAATACTGTCCTAAGAATTTCAGGCGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTTAATAACAACGGCAGCCGGTACGCTCATAGCAAAAGGTGCAAGCAGAACCTCCTGCAGAATCAAAACCGTAATGAGAACCTGGAGCAGGTGCAGCTACAACCCAGGATACACCAGACTATCGGACAGGCACACCTAGTGAAGCCTCAAAGTGTTAAAACTATAACAATAACTAGACCAACGGAATCAGTAACTGCTCAGCAGGTGATGCAGCACCAGGAGATCCTGATGCCTTTGATCTTGCCACTCACGGTGACCCTGACAGACGTTGGCGAGGAAGTGATACTCCCAGAGGGTACAAAGATATTTACTACCTCGTAA
- Protein Sequence
- MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSVKAMSFASVKMLPGDGLPSQVCCVCAQKLESAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDARFQTATESLDEEIDDEKRTLLKDHMALLQVEKLAEEERALEEEQGDVQELQEEVDQETIEEVHQVIDEEMVQQDEDEAQEITNTLEAHEQIKDEGTVVVDTMAVEEHDYIVQQDYTLQSDREYTTQEAPSENQDSEQFMELLNEDDISKDDVNQEEERDTMKAECPSERGLSQPETRRSKRRSLRRAAMADRDSDEENYFENLNLSSRLKRAQADKSEKVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKTPEKPQRGSTSTAKTPPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDKVQTKKEHTPMEVSFEEDENSLNFSNCNHAHSSNSGDDRGMAGDEEYLEDDNQGEDENQEDRRKRKRKKHIQSYSCDKCPEKFYTKRGLRKHGIKHIPLTCSVCNEEYDSLEKLRNHRTKHVMEGVLSEQDLKEDVQETVEKEVEEEEEDDIEEDIEDEIDNEEQFSDTQGMEVHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLETHMGTKYACKMCCQQFTRKDHLRRHMEQHGRLKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDDLDDDEDEDDINDDFGDHGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKAEKLEKMKKEKKDLQKNCSGNLGLGIGDFDVDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPEDRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRNENLEQVQLQPRIHQTIGQAHLVKPQSVKTITITRPTESVTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199571;
- 90% Identity
- iTF_00297733;
- 80% Identity
- -