Cpal001738.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta pallipes
Gene Symbol
-
Assembly
GCA_030142375.1
Location
JARQSW010000111.1:64916-69067[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.046 3.6 8.4 2.2 1 23 341 363 341 363 0.97
2 19 0.063 5 8.0 1.8 2 23 398 419 397 419 0.95
3 19 0.0013 0.1 13.3 1.8 1 19 496 514 496 518 0.93
4 19 0.015 1.2 9.9 2.0 2 23 522 543 521 543 0.96
5 19 3.4e-05 0.0026 18.3 2.2 2 23 609 630 608 630 0.97
6 19 0.014 1.1 10.0 6.1 3 23 637 657 635 657 0.96
7 19 0.00068 0.053 14.2 0.8 1 21 663 683 663 687 0.92
8 19 0.00047 0.037 14.7 2.4 1 23 755 777 755 777 0.97
9 19 0.00028 0.022 15.4 5.1 1 23 832 854 832 854 0.97
10 19 0.00032 0.025 15.2 0.7 1 20 859 878 859 880 0.94
11 19 0.0014 0.11 13.3 0.7 2 23 891 912 891 912 0.97
12 19 5.7e-05 0.0045 17.6 0.7 2 23 951 972 950 972 0.97
13 19 3e-05 0.0023 18.5 1.6 1 23 977 999 977 999 0.95
14 19 0.00012 0.0098 16.5 3.9 1 23 1005 1027 1005 1027 0.98
15 19 5.3e-06 0.00041 20.8 0.4 1 23 1043 1065 1043 1065 0.95
16 19 4.3e-07 3.4e-05 24.3 0.6 1 23 1071 1093 1071 1093 0.99
17 19 4.7e-05 0.0037 17.9 0.2 1 23 1099 1121 1099 1121 0.97
18 19 0.00017 0.014 16.1 4.1 1 23 1127 1149 1127 1149 0.96
19 19 0.012 0.96 10.3 0.4 1 20 1155 1174 1155 1176 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAAGGTATGGTCTCCGACGTGGAGATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAATGATGTCGCCTCCTTATCCGCCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGAGATGGTCTACCCTCACAAGTATGTTGTATCTGTGCACAAAAGTTGGAGTCTGCATATGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGGGAGAGATACGACTCGCTTAACATCAAGGAGGAGCTTTTCTTTAATGAAGTAGAAGTTCAAGTCGATGCTCGTTTTCAAACTTCTAGCGAATCTTTAGATGAGGAAATTGATGATGAAAAAAGGACTTTATTAAAGGATCATATGGCTCTTCTACAAGTGGAGAAGCTTGCAGAGGAAGAAACAGGATTGGAGGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAAGTTGACCAGGACACCATTCAAGAAGACCACCAGGTCATTGACGAAGAAATAATTCAGCAAGATGAAGATCAGACACACGAAATAACAAACACTTTGGAAGCTCACGAACAGATCAAAGACGAGGGTACGGTTGTAGTGAATACTATGGCAGTGGAGGAACACGATTACATTGTGCAACAGGATTACACTTTACAATCTGATCGAGAATATGCTACGCAAGAAACTCCATCTGAAAATCAGGACTCCGAACAGTTCATAGAACTCCTGAATGAAGAACACATTCCCAAGGATGATATGATGAATCAAGAACAGCAATGCAATACAATGAAAGCAGAGTGTCCGTCCGAGCGTAGTTTATCCAAAACAGAAACACGAAGGAGTAAACGCAGGTCATTACGAAGGGCAGCCATGGCTGATCGGGTCTCCGACGAGGAAAACTACTTCGAGAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAGATATTCTTCATGTGTTACTTGTGTGACAAGCAGTTCTTATCAAAAGCCGTTCTCAAAGAACACATGCACTCTCATGAAGAAGTGAGACGAGCCTTATCCCTGAAAAAGACACACGAGAAGCCACAGAGGAGTAGCACAGGTACAGCGAAGATACCGCCGTCAGGTAAACGCGCCAACAAGTGTCCTCATTGTGGTAAAGAATATCTTTATGTGATTTCTTTCAATAAGCACCTGAAGCAACATGAGAAAGATAATCTGCAGACCAAGAAGGAACACATGCCGCTGGAGGTTTCCTTCGAAGAGGATGAGAATAGTCTAAACTTTTCTAATTGCAATCGTGCACCCAGTTCTAATTCGGGTGATGATAGAGACATGAGGGAGGACGAGGAATATCTCGAGGATGATAATCAGAACGAGAATGAGGATCAGGAAGacagaataaagagaaagaggaagaaccACATACAATCCTACTCGTGTAACAAGTGCCCTGAGAAGTTTTATACGAAACGTGGTTTACGTAAACATGACATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAGGAGTACGACTCTCTGGAGAAGCTTAGGCACCATAGGACAAAGCATGTGATGGAAGGTGTTTTGTCTGAACAAGATTTGAAGGAAGATGTGCAGGAGATTGTTGAAAAGGAGGttgaagaagaggatgaagatgatATTGAGGAGGATATCGAGGATGAGGTAGATAATGAAGAACAGTTTTCGGACACCCAAGGAAAGGAGATGCATAGGAAGAGAAGATGGAACGAAACAAAAGATTTGAAGTGTCCGAACTGTCCTATGACTTATTCCCATAAAAAATCCTTATCGAGACACTTAGAAACACATGAGGGTACCAAGTATGGTTGCAAGATGTGTTGTCAACAGTTCAGCAGGAAGGACCATCTCCGTAGGCATATGGAGCAGCATGGTAGAGTAAAGTCCTTTAAGTGCACGCAGTGTAATAAAACCTTTGGCAATGAATTGACACTTCGAAACCATCTCATAGCTACCAATCATAAAACTTTTGTGCACGGTCAGGAATATGATCCTAATAAAAGAATCAAAAGAGTTGCTGCGAAGGCTGCGCAAAAGATTATTGACAAGATCAAAATAGAGGACGATCTTgaggatgacgaggatgaggatgataTCAATGATGACTTTGGCAATCGTGGCGATGACTACGGACCAACAAAGAAACATAATTACAGAAAGGACTTCGAGTGCGCCACCTGTGGTAGAAAATGTGGCTCTAAACAATCCTTAACAAAACACATGGAGCAACACGTCAAGGATGAGAAAGCCGAAAAActagagaaaatgaagaaggatAAGAAAGATTTACTAAAGAATTGCAGCGGTAATCTTGCTCTTGGAATAGGCGACTTCGAGATAGACGACGATGAGAATTCAGACTTCGAAAGCGGTTTAGAGTGGCCAATAGACAATCACGAGTGCACTacttgtaaaaagaaatatagcaCGAAAAAGTCCCTCTTGCGACACCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGTAATGTAAAGTTCTATCGCAAGGACAAGCTAAAAGCGCACTACGATAAGTGCTCGGAGAAAAATCCTGACCAGGTCAGGAAGTGCAACATCTGCGGGGATAGCTTCGAAAGCAATGAACTCCTACGGGAACACAGAACCAAGCACGTCACCGAAGGCATCCTTACAGAAGAGGATCTCAGGGACATAGAACCCAGGCCAGAGAATCGCAAAAAGGGTGAGAAAATCGTTCGCAAACGAAGAACAGACATAGTAGGCTTAGAGTGTACCGAGTGCAACAAGCAGTACACATCTCGTAAGGGTCTTCTGCGTCATCTCCAAGTACACGAGGGTAAGAAGTACCTCTGTGACATTTGCCCCAAGAAATTCTACAGACGAGAACACCTTAAGATTCACGTAGCTAAACACAATATGATAAAACCATACAAGTGCACGCGCTGCACGAAACGCTTCACCAAGGAGGAGCAGCTTACGAATCACTTGACGAAGCACGACCGTAACTTCAAGAAGAGCAAGGACACGGACAGTTCGAAGAGGTTTCTGTGCGAGATCTGCTCCAAGAGTTTCACCCAGTCGACGACGTTGATAGCTCATCTAAGGGCGCACAACGGTATAAAGCCCTACGTCTGCGAAGTCTGCTCTAGGCCCTTCACCACCAATGCGTATCTGAAAATGCATATGAGAACGCATACCCAGGAACGTCCTTACATATGTCAGTACTGCTCGCGCGCATTCGCCAGAGCTGACACACTGGCCAATCATTTAACCTCTCATACAGGTGAGGCTAAGTATCACTGCAAATACTGTCCTAAGAATTTCAGGCGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACTGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTTAATAACAACGGCAGCCGGTACGCTCACAGCAAAAGGTGTAAGCAGAACCTCCTGCAGAATCAAAACCGTAATGAGAACTTGGAGCAGGTACAGCTTCAACCCCGGATACACCAGACCATCGGACAGGCACACATAGTGAAGCCTCAAAGTGTTAAAACTATAACAATAGCTAGACCAGGGGATACAGTAACTGCGCAGCAGGTAATGCAGCACCAGGAGATCCTGATGCCCTTGATCTTACCATTGACGGTGACCCTGACGGACGTTGGCGAAGAAGTGATACTACCAGAgggtacaaaaatatttactaccTCGTAA
Protein Sequence
MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSAKAMSFASVKMLPGDGLPSQVCCICAQKLESAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDARFQTSSESLDEEIDDEKRTLLKDHMALLQVEKLAEEETGLEEEQGDVQELQEEVDQDTIQEDHQVIDEEIIQQDEDQTHEITNTLEAHEQIKDEGTVVVNTMAVEEHDYIVQQDYTLQSDREYATQETPSENQDSEQFIELLNEEHIPKDDMMNQEQQCNTMKAECPSERSLSKTETRRSKRRSLRRAAMADRVSDEENYFENLNLSSRLKRAQADKSEKIFFMCYLCDKQFLSKAVLKEHMHSHEEVRRALSLKKTHEKPQRSSTGTAKIPPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDNLQTKKEHMPLEVSFEEDENSLNFSNCNRAPSSNSGDDRDMREDEEYLEDDNQNENEDQEDRIKRKRKNHIQSYSCNKCPEKFYTKRGLRKHDIRHIPLTCSVCNEEYDSLEKLRHHRTKHVMEGVLSEQDLKEDVQEIVEKEVEEEDEDDIEEDIEDEVDNEEQFSDTQGKEMHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLETHEGTKYGCKMCCQQFSRKDHLRRHMEQHGRVKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDDLEDDEDEDDINDDFGNRGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKLEKMKKDKKDLLKNCSGNLALGIGDFEIDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRTKHVTEGILTEEDLRDIEPRPENRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITIARPGDTVTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01199571;
90% Identity
iTF_00297733;
80% Identity
-