Csar001658.1
Basic Information
- Insect
- Cephus sareptanus
- Gene Symbol
- -
- Assembly
- GCA_030142515.1
- Location
- JARQTD010000120.1:65725-69918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.047 3.6 8.4 2.3 1 23 339 361 339 361 0.97 2 19 0.063 4.9 8.0 1.8 2 23 392 413 391 413 0.95 3 19 0.0016 0.12 13.0 1.5 1 19 490 508 490 512 0.93 4 19 0.024 1.8 9.4 1.7 2 23 516 537 515 537 0.95 5 19 2.1e-05 0.0016 18.9 2.8 2 23 603 624 602 624 0.97 6 19 0.016 1.2 9.9 6.2 3 23 631 651 629 651 0.96 7 19 0.00068 0.053 14.2 0.8 1 21 657 677 657 681 0.92 8 19 0.00048 0.037 14.7 2.4 1 23 749 771 749 771 0.97 9 19 0.00028 0.022 15.4 5.1 1 23 826 848 826 848 0.97 10 19 0.00032 0.025 15.2 0.7 1 20 853 872 853 874 0.94 11 19 0.0011 0.085 13.6 0.3 2 23 885 906 885 906 0.97 12 19 5.7e-05 0.0044 17.6 0.7 2 23 945 966 944 966 0.97 13 19 3e-05 0.0023 18.5 1.6 1 23 971 993 971 993 0.95 14 19 0.00013 0.0097 16.5 3.9 1 23 999 1021 999 1021 0.98 15 19 5.3e-06 0.00041 20.8 0.4 1 23 1037 1059 1037 1059 0.95 16 19 4.3e-07 3.3e-05 24.3 0.6 1 23 1065 1087 1065 1087 0.99 17 19 4.7e-05 0.0036 17.9 0.2 1 23 1093 1115 1093 1115 0.97 18 19 0.00017 0.013 16.1 4.1 1 23 1121 1143 1121 1143 0.96 19 19 0.012 0.95 10.3 0.4 1 20 1149 1168 1149 1170 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAAGGTATGGTCTCCGACGTGGAGATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAATGATGTCGCCTCCTTATCCGCCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGGGATGGTCTACCCTCACAAGTATGCTGTGTCTGTGCACAAAAGTTGGAGTCTGCATATGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGGGAGAGATATGACTCGCTTAACATCAAGGAGGAGCTTTTCTTTAATGAAGTAGAAGTTCAAGTTGATGCTCATTTTCAAACTTCTAGTGAATCTTTAGATGAGGAGATTGATGATGAAAAAAGGACTTTATTAAAGGATCATATGGCTCTTCTACAAGTGGAGAAGCTTGCAGAGGAAGAAACAGCATTGGAGGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAGGTTGACCAGGAGACCATTCAAGAAGACCAGCAGGTCATTGATGAAGAAATAATTCAGGAAGATGAAGATCAGACACACGAAATAACAAACACTTTGGAAGCTCACGAACAAATCAAAGACGAGGGTACAATTGTAGTCGATACTATGGCAGTGGAGGAACACGATTACATTGTGCAACATGATTACACTTTACAATCTGATCGAGAATATACTACGCAAGAGGCTCCATCTCAAAATCAGGACTCTGAACAGTTCATGGAACTCCTGAATGAAGAAGACATTCCCAAGGATATCAACCAAGAAGAGCAATGTGATACAACGAAAGCAGACTGTCCGTCCGATCGTAGTTTATCCCAAACAGAAACACGAAGGAGTAAACGCAGGTCCTTAAGAAGGGCAGCTATGGCTGATCGGGTCTCCGACGAGGAAAACTATTTCGAGAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAAGTATTCTTCATGTGTTACTTGTGCGACAAGCAGTTCTTGTCAAAAGGCGTTCTCAAAGAACACATGCATTCTCATGAAGAAGTTAGACGAGCCTTATCCCTGAAAAAGACACCTGAGAAGCCACAGAGGGGTAACACAGGTACACCGTCAGGTAAACGCGCCAATAAGTGTCCTCATTGTGGTAAAGAATATCTTTATGTGATTTCTTTCAATAAGCACCTGAAGCAACATGAGAAAGATAAGGTGCAGGCTAAGAAGGAACACATGCCGCTGGAAGTTTCCTTCGAAGAGGATGAGAATAGTCTAAACTTTTCTAATTGCAATCGTGCACCCAGTTCTAATTCAGATGACGATAGAAGCATGAGGGAGGACGAGGAATATCTCGAGGATGATAATCAGAACGAGAATGAGGATCAAGAAGacagaagaaagagaaagaggaagaaacacATACAGTCCTACTCGTGTGACAAGTGCCCTGAGAAGTTTTATACGAAACGTGGTTTACGTAAACATGACATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAGGAGTACGACTCTCTGGAGAAGCTTAGGCACCATAGGACAAACCATGTGATTGAAGGTGTTTTGTCTGAACAAGATTTGAAGGAAGATATGCAGGAGATTGTTGAAAAGGAGGttgaagaagaggatgaagatgatATTGAGGAGGATATCGAGGATGATGTAGATAACGAAGAACAGTATTCAGATACCCAAGGAAAGGAGATGCATAGGAAGAGAAGATGGAATGAAACAAAAGATTTGAAGTGTCCGAACTGTCCAATGACTTATTCccataaaaaatctttatcaaGACACTTGCAAACACATGAGGGTACCAAGTATGGTTGTAAGATGTGTTGTCAACAGTTCACCAGAAAGGACCATCTCCGTAGGCATATGGAACAGCATGGCAGAGTCAAGTCCTTTAAGTGCACGCAGTGTAATAAAACCTTTGGCAATGAATTGACACTTCGAAACCATCTCATAGCTACCAATCATAAGACTTTTGTGCATGGTCAGGAATATGATCCTAATAAAAGAATCAAAAGAGTTGCTGCGAAGGCTGCGCAAAAGATTATTGACAAGATCAAAATAGAGGACGATCTTGAGgatgacgaggatgaggatgatatCAATGATGACTTTGGCAATCATGGTGATGACTACGGACCAACTAAGAAACATAATTACAGAAAGGACTTCGAGTGCGCCACCTGTGGTAGAAAATGTGGCTCTAAACAATCCTTAACAAAGCACATGGAGCAGCACGTCAAGGATGAGAAAGCAGAAAAAttagagaaaatgaagaaggaTAAGAAAGACTTACAAAAGAATTGCAGCGGTAATCTTGGTCTTGGAATAGGCGACTTCGACATAGACGACGATGAGAATTCAGACTTCGAGAGCGGTTTAGAGTGGCCAATAGACAATCACGAGTGCACTacttgtaaaaagaaatatagcaCGAAGAAGTCCCTCCTGCGACACCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGCAACGTAAAGTTCTACCGCAAGGACAAGCTGAAAGCACACTACGATAAGTGCTCAGAGAAAAATCCTGACCAGGTCAGGAAGTGCAACATCTGTGGGGATAGCTTCGAAAGTAATGAACTCCTACGAGAACACAGAGCCAAGCACGTCACTGAAGGGATCCTTACGGAAGAGGATCTCAGGGACATAGAACCCAGGCCAGAGAATCGCAAAAAGGGTGAGAAAATCGTTCGTAAACGAAGAACAGATATAGTAGGCTTAGAGTGTACCGAGTGCAACAAACAGTACACATCTCGTAAGGGTCTTCTGCGTCATCTCCAAGTACACGAGGGTAAGAAGTACCTCTGTGACATATGCCCCAAGAAATTCTACAGGCGAGAACACCTTAAGATTCACGTAGCTAAACACAACATGATAAAACCATACAAGTGCACGCGCTGCACGAAACGCTTCACCAAGGAGGAGCAGCTTACAAATCACTTGACGAAGCACGACCGTAACTTCAAGAAGAGCAAGGATACAGACAGTTCGAAGAGGTTTCTCTGTGAGATCTGCTCCAAGAGTTTCACCCAGTCGACGACGCTGATAGCTCATCTAAGGGCGCACAACGGTATAAAGCCCTACGTCTGCGAAGTCTGCTCTAGGCCCTTCACCACCAATGCGTACCTGAAAATGCACATGAGAACGCATACCCAGGAACGTCCTTACATATGCCAGTACTGCTCTCGCGCATTCGCCAGAGCTGACACACTGGCCAATCACTTAACCTCTCATACAGGTGAGGCTAAGTATCACTGCAAATACTGTCCTAAGAATTTCAGGCGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTCAATAACAACGGTAGCCGGTACGCTCATAGCAAAAGGTGTAGGCAGAACCTCCTGCAGAATCAAAACCGCAATGAGAACTTGGAGCAGGTGCAGCTGCAACCCCGGATACACCAGACCATCGGACAGGCACACATAGTGAAGCCTCAAAGTGTTAAAACCATAACAATAACTAGACCAGGGGATACAGTAACTACTCAGCAGGTAATGCAGCACCAAGAAATCTTGATGCCCTTGATCTTACCACTCACGGTGACCCTGACGGACGTTGGCGAAGAAGTGATACTCCCAGAgggtacaaaaatatttactaccTCGTAA
- Protein Sequence
- MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSAKAMSFASVKMLPGDGLPSQVCCVCAQKLESAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDAHFQTSSESLDEEIDDEKRTLLKDHMALLQVEKLAEEETALEEEQGDVQELQEEVDQETIQEDQQVIDEEIIQEDEDQTHEITNTLEAHEQIKDEGTIVVDTMAVEEHDYIVQHDYTLQSDREYTTQEAPSQNQDSEQFMELLNEEDIPKDINQEEQCDTTKADCPSDRSLSQTETRRSKRRSLRRAAMADRVSDEENYFENLNLSSRLKRAQADKSEKVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKTPEKPQRGNTGTPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDKVQAKKEHMPLEVSFEEDENSLNFSNCNRAPSSNSDDDRSMREDEEYLEDDNQNENEDQEDRRKRKRKKHIQSYSCDKCPEKFYTKRGLRKHDIRHIPLTCSVCNEEYDSLEKLRHHRTNHVIEGVLSEQDLKEDMQEIVEKEVEEEDEDDIEEDIEDDVDNEEQYSDTQGKEMHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLQTHEGTKYGCKMCCQQFTRKDHLRRHMEQHGRVKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDDLEDDEDEDDINDDFGNHGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKLEKMKKDKKDLQKNCSGNLGLGIGDFDIDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPENRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCRQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITITRPGDTVTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199571;
- 90% Identity
- iTF_00297733;
- 80% Identity
- -