Tsti001656.1
Basic Information
- Insect
- Trachelus stipa
- Gene Symbol
- -
- Assembly
- GCA_036026315.1
- Location
- JAYRCB010000101.1:77717-81924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.048 4.7 8.4 2.3 1 23 340 362 340 362 0.97 2 19 0.065 6.4 8.0 1.8 2 23 397 418 396 418 0.95 3 19 0.0012 0.12 13.4 1.2 1 19 495 513 495 517 0.93 4 19 0.016 1.5 9.9 2.0 2 23 521 542 520 542 0.96 5 19 2.2e-05 0.0021 18.9 2.8 2 23 608 629 607 629 0.97 6 19 0.016 1.6 9.9 6.2 3 23 636 656 634 656 0.96 7 19 0.0007 0.068 14.2 0.8 1 21 662 682 662 686 0.92 8 19 0.00049 0.048 14.7 2.4 1 23 754 776 754 776 0.97 9 19 0.00029 0.028 15.4 5.1 1 23 831 853 831 853 0.97 10 19 0.00033 0.032 15.2 0.7 1 20 858 877 858 879 0.94 11 19 0.0011 0.11 13.5 0.3 2 23 890 911 890 911 0.97 12 19 5.9e-05 0.0058 17.6 0.7 2 23 950 971 949 971 0.97 13 19 3.1e-05 0.003 18.5 1.6 1 23 976 998 976 998 0.95 14 19 0.00013 0.013 16.5 3.9 1 23 1004 1026 1004 1026 0.98 15 19 5.5e-06 0.00053 20.8 0.4 1 23 1042 1064 1042 1064 0.95 16 19 4.5e-07 4.3e-05 24.3 0.6 1 23 1070 1092 1070 1092 0.99 17 19 4.8e-05 0.0047 17.9 0.2 1 23 1098 1120 1098 1120 0.97 18 19 0.00018 0.017 16.1 4.1 1 23 1126 1148 1126 1148 0.96 19 19 0.013 1.2 10.3 0.4 1 20 1154 1173 1154 1175 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAAGGTATGGTCTCCGACGTGGAGATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAATGATGTCGCCTCTTTATCCGCCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGGGATGGTCTACCCTCTCAAGTATGCTGTGTCTGTGCACAAAAGTTGGAGTCTGCATACGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGGGAGAGATACGACTCTCTTAATATCAAGGAGGAGCTTTTCTTTAATGAAGTAGAAGTTCAAGTCGATGCTCATTTTCAAACTTCTAGTGAATCTTTAGATGAGGAAATCGACGATGAAAAAAGGACTTTATTAAAGGATCATATGGCTCTTCTACAAGTGGAGAAGCTTGCAGAGGAAGAAACAGCATTGGAGGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAGATTGACCAGGAGACCATTCAAGAAGACCACCAGGTCATtgatgaagaaataattgagCAAGATGAAGATCAGACACACGAAATAACAGATACTTTGGAAGCTCACGAACAAATCAAAGATGAGGGTACCGTTGTAGTGGATACTATGGCAGTGGAGGAACACGATTACATTGTACAACAGGATTACACTTTACAATCTGATCGAGAATATACTACGCAAGAGGCTACATCTCAAAATCAGGACTCTGAACAGTTCATAGAACTCCTGAATGAAGAAGACATTTCCAAGGATGATATCAACCAAGAAGAGCAAAGTGATACAACGAAAGCAGAGTGTCCGTCCGAGCGTAGTTTATCTCAAACAGAAACACGAAGGAGTAAACGCAGGTCCTTACGAAGGGCAGCCATGGCTGATCGGGTTTCCGACGAGGAAAACTACTTCGAGAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAAGTATTCTTCATGTGTTACTTGTGCGACAAGCAGTTCTTATCAAAAGGCGTTCTCAAAGAACACATGCACTCCCATGAAGAAGTTAGACGAGCCTTATCCCTGAAGAAGACGCCTGAGAAGCCACAGAGGGGTAACGCAGGTACAACGAAGATACTGCCGTCAGGTAAACGTGCCAACAAGTGTCCTCATTGTGGAAAAGAATATCTTTATGTGATTTCTTTCAATAAGCATCTGAAGCAACATGAGAAAGATAAGGTGCAGACTAAGAAGGAACACATGCCGCTGGAAGTTTCCTTCGAAGAAGATGAGAATAGTCTAAACTTTTCTAATTGTAATCGTGCACCCAGTTCTAATTCAGGTGACGATATAGGCATGAGGGAGGACGAGGAATATCTCGAGGATGGTGATCAGAACGAGAATGAGGATCAAGAAgacagaagaaagagaaagaggaagaaacaCATACAATCCTACTCGTGTAATATGTGTCCTGAAAAGTTTTATACGAAACGTGGTTTACGTAAACATGATATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAGGAGTACGACTCTTTGGAGAAGCTTAGGCACCATAGGACAAAGCATGTGATGGAAGGTGTTTTGTCTGAACAAGATTTGAAGGAAGATGCGCAGGAGATTGTTGAAAAGGAGGTTgaagaagaggatgaagatgaTATTGAGGAGGATATCGAAGATGAGGTAGATAACGAAGAACAGTTTTCAGATACCCAAGGAAAGGAGGTGCATAGGAAGAGAAGATGGAACGAAACAAAAGATTTAAAGTGTCCAAACTGTCCAATGACTTATTCCCATAAAAAATCCTTATCGAGACACTTACAAACACATGAAGGTACCAAGTATGGTTGTAAGATGTGTTGTCAACAGTTCACCAGGAAAGACCATCTCCGTAGGCATATGGAACAGCATGGTAGAGTCAAGTCCTTTAAGTGCACGCAGTGTAATAAAACCTTTGGCAATGAATTGACACTTCGAAACCATCTCATAGCTACCAATCATAAGACTTTTGTGCATGGTCAGGAATATGATCCtaataaaagaatcaaaagaGTTGCTGCGAAGGCTGCACAAAAGATTATTGACAAGATCAAAATAGAGGACGATCTTGAGGATgaagaggatgaggaggataTCAACGATGACTTTGGCAATCATGGTGATGACTACGGACCAACAAAGAAACATAATTACAGAAAGGATTTCGAGTGTGCCACCTGTGGTAGAAAATGTGGCTCTAAACAATCCTTAACAAAACATATGGAGCAACACGTCAAGGAtgagaaagcagaaaaattagaaaaaatgaagaaggatAAGAAAGACTTACAAAAGAATTGCAGCGGTAATCTTGGTCTTGGAATAGGCGACTTCGACATAGACGATGATGAGAATTCAGACTTCGAGAGCGGTTTAGAGTGGCCAATAGACAATCACGAGTGCACTacttgtaaaaagaaatatagcaCGAAGAAGTCCCTCCTACGACACCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGCAACGTAAAGTTCTACCGTAAGGATAAGCTAAAAGCACACTACGATAAATGTTCAGAGAAAAATCCTGACCAGGTCAGGAAGTGCAACATCTGTGGGGATAGCTTCGAAAGTAATGAACTCCTACGAGAACACAGAGCCAAGCACGTCACTGAAGGGATCCTTACAGAAGAGGATCTAAGGGATATAGAACCCAGGCCAGAGAATCGCAAAAAAGGTGAGAAAATCGTTCGTAAACGAAGAACAGACATAGTAGGCTTAGAGTGTACCGAGTGCAACAAGCAGTACACATCTCGTAAGGGTCTTCTGCGTCATCTCCAAGTACACGAGGGTAAAAAGTACCTCTGTGACATATGCCCCAAGAAATTCTACAGGCGAGAACACCTTAAGATTCACGTAGCTAAACACAACATGATAAAACCATACAAGTGCACGCGGTGCACGAAACGCTTCACCAAGGAGGAGCAGCTTACAAATCACTTGACGAAGCACGACCGTAACTTCAAGAAAAGCAAGGATACAGACAGTTCGAAGAGGTTTCTCTGCGAGATCTGCTCCAAGAGTTTCACCCAGTCGACGACGTTGATAGCTCATCTAAGGGCGCACAACGGTATAAAGCCCTACGTCTGCGAAGTCTGCTCTAGGCCCTTCACCACCAATGCGTACCTGAAAATGCACATGAGAACGCATACCCAGGAACGTCCTTACATATGCCAGTACTGCTCTCGCGCATTTGCCAGAGCTGACACACTGGCTAATCACCTAACCTCTCATACGGGTGAGGCTAAGTATCACTGCAAATACTGTCCTAAGAATTTCAGACGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTTAATAACAACGGCAGCCGGTACGCTCATAGCAAAAGGTGTAAGCAGAACCTCCTGCAAAATCAAAACCGCAATGAGAACTTGGAGCAGGTGCAGCTGCAACCCCGGATACACCAGACCATCGGACAGGCACACATAGTGAAGCCTCAGAGTGTTAAAACCATAACGATAACTAGACCAGGGGATACAGTAACTACTCAGCAGGTTATGCAGCACCAGGAGATCCTGATGCCCTTGATCTTACCACTCACGGTGACCCTGACGGATGTTGGCGAAGAAGTGATACTCCCAGAgggtacaaaaatatttactaccTCGTAA
- Protein Sequence
- MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSAKAMSFASVKMLPGDGLPSQVCCVCAQKLESAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDAHFQTSSESLDEEIDDEKRTLLKDHMALLQVEKLAEEETALEEEQGDVQELQEEIDQETIQEDHQVIDEEIIEQDEDQTHEITDTLEAHEQIKDEGTVVVDTMAVEEHDYIVQQDYTLQSDREYTTQEATSQNQDSEQFIELLNEEDISKDDINQEEQSDTTKAECPSERSLSQTETRRSKRRSLRRAAMADRVSDEENYFENLNLSSRLKRAQADKSEKVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKTPEKPQRGNAGTTKILPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDKVQTKKEHMPLEVSFEEDENSLNFSNCNRAPSSNSGDDIGMREDEEYLEDGDQNENEDQEDRRKRKRKKHIQSYSCNMCPEKFYTKRGLRKHDIRHIPLTCSVCNEEYDSLEKLRHHRTKHVMEGVLSEQDLKEDAQEIVEKEVEEEDEDDIEEDIEDEVDNEEQFSDTQGKEVHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLQTHEGTKYGCKMCCQQFTRKDHLRRHMEQHGRVKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDDLEDEEDEEDINDDFGNHGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKLEKMKKDKKDLQKNCSGNLGLGIGDFDIDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPENRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITITRPGDTVTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199571;
- 90% Identity
- iTF_00297733;
- 80% Identity
- -