Crun001650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus runcator
Gene Symbol
-
Assembly
GCA_030142495.1
Location
JARQTC010000118.1:77818-82022[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.046 3.3 8.4 2.3 1 23 339 361 339 361 0.97
2 19 0.062 4.5 8.0 1.8 2 23 396 417 395 417 0.95
3 19 0.0013 0.095 13.3 1.8 1 19 494 512 494 516 0.93
4 19 0.015 1.1 9.9 2.0 2 23 520 541 519 541 0.96
5 19 2.1e-05 0.0015 18.9 2.8 2 23 607 628 606 628 0.97
6 19 0.016 1.1 9.9 6.2 3 23 635 655 633 655 0.96
7 19 0.00067 0.049 14.2 0.8 1 21 661 681 661 685 0.92
8 19 0.00047 0.034 14.7 2.4 1 23 753 775 753 775 0.97
9 19 0.00028 0.02 15.4 5.1 1 23 830 852 830 852 0.97
10 19 0.00032 0.023 15.2 0.7 1 20 857 876 857 878 0.94
11 19 0.0011 0.079 13.5 0.3 2 23 889 910 889 910 0.97
12 19 5.7e-05 0.0041 17.6 0.7 2 23 949 970 948 970 0.97
13 19 3e-05 0.0022 18.5 1.6 1 23 975 997 975 997 0.95
14 19 0.00012 0.009 16.5 3.9 1 23 1003 1025 1003 1025 0.98
15 19 5.2e-06 0.00038 20.8 0.4 1 23 1041 1063 1041 1063 0.95
16 19 4.3e-07 3.1e-05 24.3 0.6 1 23 1069 1091 1069 1091 0.99
17 19 4.6e-05 0.0034 17.9 0.2 1 23 1097 1119 1097 1119 0.97
18 19 0.00017 0.012 16.1 4.1 1 23 1125 1147 1125 1147 0.96
19 19 0.012 0.88 10.3 0.4 1 20 1153 1172 1153 1174 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAAGGTATGGTCTCCGACGTGGAGATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAATGATGTCGCCTCCTTATCCGCCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGGGATGGTCTACCCTCACAAGTATGCTGTGTCTGTGCACAAAAGTTGGAGGCTGCATATGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGGGAGAGATATGACTCGCTTAACATCAAGGAGGAGCTTTTCTTTAATGAAGTAGAAGTTCAAGTTGATGCTCATTTTCAAACTTCTAGTGAATCTTTAGATGAGGAAATTGATGATGAAAAAAGGACTTTATTAAAGGATCATATGGCTCTTCTACAAGTGGAGAAGCTGGCAGAGGAAGAAACAGCATTGGAGGAAGAACAGGGAGACGTGGAAGAACTTCAAGAGGAGGTTGACCAGGAGACCATTCAAGAAGACCAGCAGGTCATTGATGAAGAAATAATTCAGCAAGATGAAGATCAGACACACGAAATAACAAACACATTGGAAGCTCACGAACAAATAAAAGACGAGGGTACGGTTGTAGTGGACACTATAGCAGTGGAGGAACACGATTACATTGTGCAACATGATTACACTTTACAATCTGATCGAGAATATACTACGCAAGAGTCTCCATCTCAAAATCAGGACTCTGAACAATTCATAGAACTCTTGAATGAAGAAGACATTCCCAAGGATATCAACCAAGAAGAGCAATGTGATACAACGAAAGCAGAGTGTCCGTCCGATCGTAGTTTATCCCAAACAGAAACACGAAGGAGTAAACGCAGGTCCTTACGAAGAGCAGCCATGGCTGATCGGGTCTCCGACGAGGAAAACTATTTCGAGAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAAGTGTTCTTCATGTGTTACTTGTGCGACAAGCAGTTCTTATCAAAAGGCGTTCTCAAAGAACACATGCATTCTCATGAAGAAGTTAGACGAGCTTTATCCCTGAAAAAGTCACCTGAGAAGCCACAGAGGGGTAACACAGGTACAGTGAAAATACCGCCGTCAGGTAAACGCGCCAACAAGTGTCCTCATTGTGGTAAAGAATATCTTTACGTGATTTCTTTCAATAAGCACCTGAAGCAACATGAGAAAGATACGCTGCAGGCTAAGAAAGAACACATGCCATTGGAAGTTTCCTTCGAAGAGGATGAGAATAGTCTAGACTTTTCTAATTGCAATCATGCACCCAGTTCTAATTCAGGTGACGATAGAAGCATGAGGGAGGACGAGGAATATCTCGAGGATGATAATCAGAACGAGAATGAGGATCAAGAAGAcagaggaaagagaaggaggaagaaacaCATACAGTCCTACTCGTGTAACAAGTGCCCTGAGAAGTTTTATACGAAACGTGGTTTACGTAAACATGACATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAGGAGTACGACTCTCTGGAGAAGCTTAGGCACCATAGGACAAAGCATGTGATTGAAGGTGTTTTGTCCGAACAAGATTTGAAGGAAGATATGCAGGAGATTGTTGAAAAGGAGAttgaagaagaggatgaagatgaTATTGAAGAGGATATCGAGGATGAGGTAGATAACGAAGAACAGTTTTCAGATACCCAAGGAAAGGAGATGCATAGGAAGAGAAGATGGAATGAAACAAAAGATTTGAAGTGTCCGAACTGTCCAATGACTTATTCCCATAAAAAATCCTTATCAAGACACTTACAAACACATGAAGGTACCAAGTATGGTTGCAAGATGTGTTGTCAACAGTTCACCAGGAAGGACCATCTCCGTAGGCATATGGAACAGCATGGTAGAGTCAAGTCCTTTAAGTGCACGCAGTGTAATAAAACCTTTGGTAATGAATTGACACTTCGAAACCATCTCATAGCTACCAATCATAAAACTTTTGTGCATGGTCAGGAATATGATCCTAATAAAAGAATCAAAAGAGTTGCTGCGAAGGCTGCGCAAAAGATTATtgacaagataaaaatagaGGACGATCTTgaggatgacgaggatgaggatgataTCAATGATGACTTTGGCAATCATGGTGATGACTACGGACCAACAAAGAAACATAATTACAGAAAGGACTTCGAGTGCGCCACCTGTGGTAGAAAATGTGGTTCTAAACAATCCTTAACAAAGCACATGGAGCAACACGTCAAGGATGAGAAAGCAGAGAAAttagagaaaatgaagaaggaTAAGAAAGACTTACAAAAGAATTGCAGCGGTAGTCTTGGTCTTGGAATAGGCGACTTCGACATAGACGACGATGAGAATTCAGACTTCGAGAGCGGTTTAGAGTGGCCAATAGACAATCACGAGTGCACTacttgtaaaaagaaatatagcaCGAAGAAGTCCCTCCTGCGACACCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGCAACGTAAAGTTCTACCGCAAGGACAAACTAAAAGCACACTACGATAAGTGCTCGGAGAAAAATCCTGACCAGGTCAGGAAGTGCAACATCTGTGGGGATAGCTTCGAAAGTAATGAACTCCTACGAGAACACAGAGCCAAGCACGTCACTGAGGGGATCCTTACAGAAGAGGATCTCAGGGACATAGAACCCAGGCCAGAGAATCGCAAAAAGGGTGAGAAAATCGTTCGTAAACGCAGAACAGACATAGTAGGCTTAGAGTGTACCGAGTGCAACAAACAGTACACATCACGTAAGGGTCTTCTGCGTCATCTCCAAGTACACGAGGGTAAGAAGTACCTCTGTGACATATGCCCCAAGAAATTCTACAGGCGAGAACACCTTAAGATTCACGTAGCTAAACACAACATGATAAAACCATACAAGTGCACGCGCTGCACGAAACGCTTCACCAAGGAGGAGCAGCTTACAAATCACTTGACGAAGCACGACCGTAACTTCAAGAAGAGCAAGGATACAGACAGTTCGAAGAGGTTTCTCTGTGAGATCTGCTCCAAGAGTTTCACCCAGTCGACGACGTTGATAGCTCATCTAAGGGCGCACAACGGTATAAAGCCCTACGTCTGCGAAGTCTGCTCTAGGCCCTTCACCACCAATGCGTACCTGAAAATGCACATGAGAACGCATACCCAGGAACGTCCTTACATATGCCAGTACTGCTCTCGCGCATTTGCCAGAGCTGACACACTGGCCAATCATTTAACCTCTCATACAGGTGAGGCTAAGTATCATTGCAAATACTGTCCTAAGAATTTCAGGCGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTCAATAACAACGGTAGCCGGTACGCTCATAGCAAAAGGTGTAGGCAGAACCTCCTGCAGAATCAAAACCGCAATGAGAACTTGGAGCAGGTGCAGCTGCAACCCCGGATACATCAGACCATCGGACAAGCACACATAGTGAAGCCTCAAAGTGTTAAAACCATAACAATAACTAGACCAGGGGATACAGTAACTACTCAGCAGGTAATGCAGCACCAGGAGATCCTGATGCCCTTGATCTTACCACTCACGGTGACCCTGACGGACGTTGGCGAAGAAGTGATACTCCCAGAgggtacaaaaatatttactaccTCGTAA
Protein Sequence
MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSAKAMSFASVKMLPGDGLPSQVCCVCAQKLEAAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDAHFQTSSESLDEEIDDEKRTLLKDHMALLQVEKLAEEETALEEEQGDVEELQEEVDQETIQEDQQVIDEEIIQQDEDQTHEITNTLEAHEQIKDEGTVVVDTIAVEEHDYIVQHDYTLQSDREYTTQESPSQNQDSEQFIELLNEEDIPKDINQEEQCDTTKAECPSDRSLSQTETRRSKRRSLRRAAMADRVSDEENYFENLNLSSRLKRAQADKSEKVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKSPEKPQRGNTGTVKIPPSGKRANKCPHCGKEYLYVISFNKHLKQHEKDTLQAKKEHMPLEVSFEEDENSLDFSNCNHAPSSNSGDDRSMREDEEYLEDDNQNENEDQEDRGKRRRKKHIQSYSCNKCPEKFYTKRGLRKHDIRHIPLTCSVCNEEYDSLEKLRHHRTKHVIEGVLSEQDLKEDMQEIVEKEIEEEDEDDIEEDIEDEVDNEEQFSDTQGKEMHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLQTHEGTKYGCKMCCQQFTRKDHLRRHMEQHGRVKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDDLEDDEDEDDINDDFGNHGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKLEKMKKDKKDLQKNCSGSLGLGIGDFDIDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPENRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCRQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITITRPGDTVTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS