Crja001663.1
Basic Information
- Insect
- Cephus rjabovi
- Gene Symbol
- -
- Assembly
- GCA_030264185.1
- Location
- JASCRG010000119.1:78839-83034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.048 3.9 8.4 2.3 1 23 340 362 340 362 0.97 2 19 0.065 5.3 8.0 1.8 2 23 393 414 392 414 0.95 3 19 0.0016 0.13 13.0 1.5 1 19 491 509 491 513 0.93 4 19 0.016 1.3 9.9 2.0 2 23 517 538 516 538 0.96 5 19 2.2e-05 0.0018 18.9 2.8 2 23 604 625 603 625 0.97 6 19 0.016 1.3 9.9 6.2 3 23 632 652 630 652 0.96 7 19 0.0007 0.057 14.2 0.8 1 21 658 678 658 682 0.92 8 19 0.00049 0.04 14.7 2.4 1 23 750 772 750 772 0.97 9 19 0.00029 0.023 15.4 5.1 1 23 827 849 827 849 0.97 10 19 0.00033 0.027 15.2 0.7 1 20 854 873 854 875 0.94 11 19 0.0011 0.092 13.6 0.3 2 23 886 907 886 907 0.97 12 19 5.9e-05 0.0048 17.6 0.7 2 23 946 967 945 967 0.97 13 19 3.1e-05 0.0025 18.5 1.6 1 23 972 994 972 994 0.95 14 19 0.00013 0.01 16.5 3.9 1 23 1000 1022 1000 1022 0.98 15 19 5.4e-06 0.00044 20.8 0.4 1 23 1038 1060 1038 1060 0.95 16 19 4.4e-07 3.6e-05 24.3 0.6 1 23 1066 1088 1066 1088 0.99 17 19 4.8e-05 0.0039 17.9 0.2 1 23 1094 1116 1094 1116 0.97 18 19 0.00018 0.014 16.1 4.1 1 23 1122 1144 1122 1144 0.96 19 19 0.013 1 10.3 0.4 1 20 1150 1169 1150 1171 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGGTAAATACGTCGGAGCCACCTGAAAATGAGGAAGGTATGGTCTCCGACGTGGAGATATGTCGCGTGTGTCTCCTTGGAAATTTGGTTATGCGGGACCTCTTCCAGGAGAATGATGTCGCCTCCTTATCCGCCAAGGCCATGAGCTTCGCCAGCGTTAAGATGTTACCAGGGGATGGTCTACCCTCACAAGTATGCTGTGTCTGTGCACAAAAGTTGGAGTCTGCATATGAATTCAAATTACAAGTTGAACAAGCTGATGGAGTCTTGCGAGAGAGATATGACTCGCTTAACATCAAGGAGGAGCTTTTCTTTAATGAAGTAGAAGTTCAAGTTGATGCTCATTTTCAAACTTCTAGTGAATCTTTAGATGAGGAAATTGATGATGAAAAAAGGACTTTATTAAAGGATCATATGGCTCTTCTACAAGTGGAGAAGCTTGCAGAGGAAGAAACATCATTGGAGGAAGAACAGGGAGACGTGCAAGAACTTCAAGAGGAGGTTGACCAGGAGACCATTGAAGAAGACCAGCAGGTCATTGATGAAGAAATAATTCAGGAAGATGAAGATCAGACACACGAAATAACAAACACTTTGGAAGCTCACGAACAAATCAAAGACGAGGGTACAATTGTAGTCGATACTATGGCAGTGGAGGAACATGATTACATTGTGCAACATGATTACACTTTACAATCTGATCGAGAATATACTACGCAAGAGGCTCCATCTCAAAATCAGGACTCCGAACAGTTCATGGAACTCCTGAATGAAGAAGACATTCCCAAGGATGATATCAACCAAGAAGAGCAATGTGATACAACGAAAGCAGAGTGTCCGTCCGATCGTAGTTTATCCCAAACAGAAACACGAAGGAGTAAACGCAGGTCCTTAAGAAGGGCAGCTATGGCTGATCGGGTCTCCGACGAGGAAAACTATTTCGAGAATCTCAACCTCAGCTCCAGGTTGAAACGTGCTCAGGCTGACAAAAGTGAGAAAGTATTCTTCATGTGTTACTTGTGCGACAAGCAGTTCTTATCAAAAGGCGTTCTCAAAGAACACATGCATTCTCATGAAGAAGTTAGACGAGCCTTATCCCTGAAAAAGACACCTGAGAAGCTACAGAGGGGTAACACAGGTACACCGTCAGGTAAACGCGCCAATAAGTGTCCTCATTGTGGTAAAGAATATCTTTATGTGATTTCTTTCAATAAGCACCTGAAGCAacatgagaaagagaaagtgcAGGCTAAGAAGGAACACATGCCGCTGGAAGTTTCCTTCGAAGAGGATGAGAATAGTCTAACCTTTTCTAATTGTAATCGTGCACCCAGTTCTAATTCAGGTGACGATAGAAGCATGAGGGAGGACGAGGAATATCTCGAGGATGATAATCAGAACGAGAATGAGGATCAAGAAGacagaagaaagagaaagaggaagaaacacATACAGTCCTACTCGTGTGACAAGTGCCCTGAGAAGTTTTATACGAAACGTGGTTTACGTAAACATGACATTAGACATATTCCATTGACGTGCAGTGTATGCAACGAGGAGTACGACTCTCTGGAGAAGCTTAGGCACCATAGGACAAAGCATGTGATTGAAGGTGTTTTGTCTGAACAAGATTTGAAGGAAGATATGCAGGAGATTGTTGAAAAGGAGGTTgaagaagaggatgaagatgaTATTGAGGAGGATATCGAGGATGATGTAGATAACGAAGAACAGTATTCAGATACCCAAGGAAAGGAGATGCATAGGAAGAGAAGATGGAATGAAACAAAAGATTTGAAGTGTCCGAACTGTCCAATGACTTATTCccataaaaaatctttatcaaGACACTTGCAAACACATGAGGGTACCAAGTATGGTTGTAAGATGTGTTGTCAACAGTTCACCAGAAAGGACCATCTCCGTAGGCATATGGAACAGCATGGCAGAGTCAAGTCCTTTAAGTGCACGCAGTGTAATAAAACATTTGGCAATGAATTGACACTTCGAAACCATCTCATAGCTACCAATCATAAAACTTTTGTGCATGGTCAGGAATATGATCCTAATAAAAGAATCAAAAGAGTTGCTGCGAAGGCTGCGCAAAAGATTATTGACAAGATCAAAATAGAGGACGATCTTGAGgatgacgaggatgaggatgataTCAATGATGACTTTGGCAATCATGGTGATGACTACGGACCAACTAAGAAACATAATTACAGAAAGGACTTCGAGTGCGCCACCTGTGGTAGAAAATGTGGCTCTAAACAATCCTTAACAAAGCACATGGAGCAACACGTCAAGGATGAGAAAGCAGAAAAAttagagaaaatgaagaaggaTAAGAAAGACTTACAAAAGAGTTGCAGCGGCAATCTTGGTCTTGGAATAGGCGACTTCGACATAGACGACGATGAGAATTCAGACTTTGAGAGCGGTTTAGAGTGGCCAATAGACAATCACGAGTGCACTacttgtaaaaagaaatatagcaCGAAGAAGTCCCTCCTGCGACACCAGCTTCTCCACGAGGAGCCAAACTTTGAGTGCGATATATGCAACGTAAAGTTCTACCGCAAGGACAAGCTGAAAGCACACTACGATAAGTGCTCAGAGAAAAATCCTGACCAGGTCAGGAAGTGCAACATCTGTGGGGATAGCTTCGAAAGTAATGAACTCCTACGAGAACACAGAGCCAAGCACGTCACTGAAGGGATCCTTACAGAAGAGGATCTCAGGGACATAGAACCCAGGCCAGAGAATCGCAAAAAGGGTGAGAAAATCGTTCGTAAACGAAGAACAGATATAGTAGGCTTAGAGTGTACCGAGTGCAACAAACAGTACACATCTCGTAAGGGTCTTCTGCGTCATCTCCAAGTACACGAGGGTAAGAAGTACCTCTGTGACATATGCCCCAAGAAATTCTACAGGCGAGAACACCTCAAGATTCACGTAGCTAAACACAACATGATAAAACCATACAAGTGCACGCGCTGCACGAAACGCTTCACCAAGGAGGAGCAGCTTACAAATCACTTGACGAAGCACGACCGTAACTTCAAGAAGAGCAAGGATACAGACAGTTCGAAGAGGTTTCTCTGTGAGATCTGCTCCAAGAGTTTCACCCAGTCGACGACGCTGATAGCTCATCTAAGGGCGCACAACGGTATAAAGCCCTACGTCTGCGAAGTCTGCTCTAGGCCCTTCACCACCAATGCGTACCTGAAAATGCACATGAGAACGCATACCCAGGAACGTCCTTACATATGCCAGTACTGCTCTCGCGCATTCGCCAGAGCTGACACACTGGCCAATCATTTAACCTCTCATACAGGTGAGGCTAAGTATCACTGCAAATACTGTCCTAAGAATTTCAGGCGCCTGAAGTCTCTCAAGGAACACGTTTTCATACACACGGGTCAACGACCTTATGCCTGTCCCACCTGCGACAGGAGATTCAATAACAACGGTAGCCGGTACGCTCATAGCAAAAGGTGTAGGCAGAACCTCCTGCAGAATCAAAACCGCAATGAGAACTTGGAGCAGGTGCAGCTGCAACCCCGGATACACCAGACCATCGGACAGGCACACATAGTGAAGCCTCAAAGTGTTAAAACCATAACAATAACTAGACCAGGGGATGCAGTAACTGCTCAGCAGGTAATGCAGCACCAGGAAATCCTGATGCCCTTGATCTTACCACTCACGGTGACCCTGACGGACGTTGGCGAAGAAGTGATACTCCCAGAgggtacaaaaatatttactaccTCGTAA
- Protein Sequence
- MDAVEVNTSEPPENEEGMVSDVEICRVCLLGNLVMRDLFQENDVASLSAKAMSFASVKMLPGDGLPSQVCCVCAQKLESAYEFKLQVEQADGVLRERYDSLNIKEELFFNEVEVQVDAHFQTSSESLDEEIDDEKRTLLKDHMALLQVEKLAEEETSLEEEQGDVQELQEEVDQETIEEDQQVIDEEIIQEDEDQTHEITNTLEAHEQIKDEGTIVVDTMAVEEHDYIVQHDYTLQSDREYTTQEAPSQNQDSEQFMELLNEEDIPKDDINQEEQCDTTKAECPSDRSLSQTETRRSKRRSLRRAAMADRVSDEENYFENLNLSSRLKRAQADKSEKVFFMCYLCDKQFLSKGVLKEHMHSHEEVRRALSLKKTPEKLQRGNTGTPSGKRANKCPHCGKEYLYVISFNKHLKQHEKEKVQAKKEHMPLEVSFEEDENSLTFSNCNRAPSSNSGDDRSMREDEEYLEDDNQNENEDQEDRRKRKRKKHIQSYSCDKCPEKFYTKRGLRKHDIRHIPLTCSVCNEEYDSLEKLRHHRTKHVIEGVLSEQDLKEDMQEIVEKEVEEEDEDDIEEDIEDDVDNEEQYSDTQGKEMHRKRRWNETKDLKCPNCPMTYSHKKSLSRHLQTHEGTKYGCKMCCQQFTRKDHLRRHMEQHGRVKSFKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKIEDDLEDDEDEDDINDDFGNHGDDYGPTKKHNYRKDFECATCGRKCGSKQSLTKHMEQHVKDEKAEKLEKMKKDKKDLQKSCSGNLGLGIGDFDIDDDENSDFESGLEWPIDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFESNELLREHRAKHVTEGILTEEDLRDIEPRPENRKKGEKIVRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFTKEEQLTNHLTKHDRNFKKSKDTDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCRQNLLQNQNRNENLEQVQLQPRIHQTIGQAHIVKPQSVKTITITRPGDAVTAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01199571;
- 90% Identity
- iTF_00297733;
- 80% Identity
- -